Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012888.1 Corchorus olitorius cultivar O-4 contig12921, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7198

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
637--661
11
2.3
11
100
0
50
0
0
8
92
0.40
856--967
34
3.3
34
83
3
111
33
7
18
40
1.78
976--1058
32
2.6
32
90
0
130
20
3
21
54
1.60
3057--3270
4
55.5
4
64
15
76
64
0
9
25
1.29
3076--3145
23
2.8
26
70
16
67
67
0
8
24
1.19
3094--3170
19
4.2
17
71
18
57
66
0
10
23
1.22
3158--3262
27
4.2
25
74
18
96
63
1
7
26
1.31
3191--3274
19
4.1
19
70
22
62
61
1
9
27
1.34
3210--3270
27
2.3
27
82
5
70
62
1
8
27
1.33
3158--3280
46
2.7
46
96
0
219
60
2
8
28
1.38
4612--5133
213
2.4
214
78
6
529
31
22
18
27
1.97
4613--5133
54
9.7
54
82
7
490
31
22
19
27
1.97
5099--5665
35
16.0
35
91
3
796
41
19
13
26
1.88
5630--5979
54
6.5
54
83
3
398
31
22
17
28
1.97
5630--5979
162
2.2
163
84
3
454
31
22
17
28
1.97
5630--6146
54
9.6
52
80
8
348
32
22
17
27
1.96
5669--6057
162
2.4
162
80
5
439
31
23
17
27
1.97
5956--6153
106
1.9
107
87
6
294
36
21
15
26
1.93
6067--6252
93
2.0
93
88
2
275
33
21
19
24
1.97

Tables:   1

The End!