Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012890.1 Corchorus olitorius cultivar O-4 contig12923, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7174
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.33


Found at i:2183 original size:27 final size:28

Alignment explanation


    Indices: 2153--2212  Score: 68
    Period size: 28  Copynumber: 2.2  Consensus size: 28

       2143 ATTACCAAAA

                              *    *    
       2153 TACCCGTGA-TGGACAAATTTACTATAT
          1 TACCCGTGATTGGACAAAATTACGATAT

                 *       *            * 
       2180 TACCCTTGATTGGTCAAAATTACGATTT
          1 TACCCGTGATTGGACAAAATTACGATAT

                 
       2208 TACCC
          1 TACCC

       2213 CTATAATGAG


Statistics
Matches: 27,  Mismatches: 5, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  27    8  0.30
  28   19  0.70

ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35


Consensus pattern (28 bp):   
TACCCGTGATTGGACAAAATTACGATAT

Done.