Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012894.1 Corchorus olitorius cultivar O-4 contig12927, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39959

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5078--5407
163
2.0
163
98
0
633
36
17
13
31
1.90
6565--6611
22
2.1
22
100
0
94
42
25
14
17
1.87
6977--7025
23
2.1
23
84
0
62
42
14
10
32
1.79
11796--11850
13
4.2
13
86
6
76
49
1
0
49
1.11
11796--11858
25
2.5
25
84
7
74
46
1
0
52
1.10
12597--12621
8
3.1
8
100
0
50
0
12
0
88
0.53
17250--18388
437
2.6
432
82
6
1259
41
11
15
31
1.82
21007--21071
31
2.1
31
100
0
130
27
20
27
24
1.99
29859--29994
59
2.3
59
85
3
175
37
13
17
30
1.89
32104--32133
14
2.1
14
93
0
51
63
0
13
23
1.29

Tables:   1

The End!