Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012895.1 Corchorus olitorius cultivar O-4 contig12928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3098
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29


Found at i:105 original size:20 final size:20

Alignment explanation


    Indices: 80--118  Score: 69
    Period size: 20  Copynumber: 1.9  Consensus size: 20

         70 TGCCGCTAAT

                                
         80 TTATTTATGAGATTATATTC
          1 TTATTTATGAGATTATATTC

                          *    
        100 TTATTTATGAGATTTTATT
          1 TTATTTATGAGATTATATT

        119 GACAAATTGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59


Consensus pattern (20 bp):   
TTATTTATGAGATTATATTC
Done.