Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012899.1 Corchorus olitorius cultivar O-4 contig12932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45473

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
964--1185
111
2.0
111
100
0
444
46
7
8
37
1.61
10512--10546
14
2.4
15
85
4
54
31
20
11
37
1.88
18087--18122
18
2.1
17
94
5
63
63
8
16
11
1.49
34169--34230
34
1.9
34
87
9
94
56
16
4
22
1.59
34955--34992
20
1.9
20
94
0
67
21
7
10
60
1.54
35160--35206
11
4.7
10
80
17
53
38
6
23
31
1.80
35171--35206
19
1.9
18
88
5
54
38
2
25
33
1.70
38571--38606
19
1.9
18
88
5
54
36
25
0
38
1.56
38566--38617
11
5.1
10
77
17
54
38
21
1
38
1.64
40138--40195
30
2.0
29
90
10
91
62
5
12
20
1.49
41860--42016
32
4.9
32
76
0
152
25
19
21
33
1.97
41854--42016
64
2.5
64
80
2
193
26
19
20
33
1.96

Tables:   1

The End!