Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012901.1 Corchorus olitorius cultivar O-4 contig12934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38078

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10160--10202
2
21.5
2
100
0
86
48
0
0
51
1.00
11169--11196
1
28.0
1
100
0
56
100
0
0
0
0.00
13570--13628
19
3.0
20
85
5
75
38
11
16
32
1.86
13678--13714
19
1.9
19
94
0
65
35
13
35
16
1.88
14962--15033
29
2.6
27
89
8
108
40
6
6
45
1.58
25506--25640
31
4.4
31
85
0
162
20
24
24
31
1.98
32001--32038
1
38.0
1
100
0
76
0
0
0
100
0.00
33582--33616
12
2.9
12
82
0
52
14
17
11
57
1.66
34024--34081
16
3.6
16
77
9
73
43
8
1
46
1.44
34027--34088
32
2.1
29
88
11
90
46
6
3
43
1.45
34789--34827
15
2.9
13
82
17
53
53
0
0
46
1.00
35264--35497
22
10.5
22
72
10
138
35
9
17
36
1.83
35265--36502
44
28.4
42
68
16
360
38
8
16
35
1.80
35261--35497
66
3.5
68
84
8
290
35
9
18
36
1.83
35502--36456
22
43.4
21
69
15
345
38
8
16
35
1.80
35788--36000
89
2.4
89
94
1
367
40
7
13
38
1.73
37323--38078
335
2.3
332
85
5
972
33
14
14
36
1.88

Tables:   1

The End!