Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012908.1 Corchorus olitorius cultivar O-4 contig12941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26713

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10662--10696
18
1.9
18
94
0
61
51
11
8
28
1.67
13455--13658
110
1.9
110
96
0
381
49
9
9
30
1.68
14844--14898
27
2.0
28
85
3
76
49
0
1
49
1.11
14928--15002
35
2.1
35
95
0
132
44
14
16
25
1.85
16535--16588
6
9.0
6
95
0
99
33
14
0
51
1.43
17651--17715
27
2.4
27
87
5
87
15
26
18
40
1.90
21896--21928
2
16.5
2
100
0
66
51
48
0
0
1.00
21928--21967
2
20.5
2
89
5
55
45
0
5
50
1.23
22324--22429
42
2.5
42
80
8
126
19
28
17
33
1.95
22531--22733
99
2.1
99
94
0
352
18
21
18
41
1.91
23765--23803
10
3.9
10
79
0
51
66
0
2
30
1.05
25748--25784
18
2.1
18
95
5
67
5
13
16
64
1.45

Tables:   1

The End!