genome.fa.s12915.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012915.1 Corchorus olitorius cultivar O-4 contig12948, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75911

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7--46	2	20.0	2	100	0	80	50	0	0	50	1.00
2109--2178	22	3.0	22	73	15	77	37	15	14	32	1.88
5530--5980	46	9.9	46	82	9	457	20	28	16	34	1.95
5530--5980	93	4.9	90	83	9	474	20	28	16	34	1.95
6037--6732	48	14.6	47	86	5	871	13	22	21	42	1.87
6029--6732	96	7.4	96	91	1	1027	13	23	21	42	1.88
6033--6732	239	2.9	240	90	2	1070	13	23	21	42	1.88
7583--7608	11	2.4	11	100	0	52	7	15	7	69	1.35
8641--8696	28	2.0	28	86	6	78	39	14	8	37	1.77
10237--10841	48	12.9	48	84	5	772	14	21	20	43	1.87
10527--10607	39	2.1	39	86	4	110	16	23	20	39	1.92
10479--10746	87	3.0	85	86	7	322	14	23	20	41	1.89
10431--10841	135	3.0	135	84	7	508	15	21	20	42	1.88
10591--10844	93	2.7	96	88	3	356	16	20	18	44	1.87
20366--20391	11	2.4	11	100	0	52	7	15	7	69	1.35
21151--21192	15	2.7	15	92	3	66	11	9	14	64	1.50
36285--36316	2	15.5	2	93	6	55	46	0	3	50	1.17
40424--40529	22	4.8	22	68	9	54	31	9	19	39	1.84
40546--40595	22	2.3	22	86	3	66	48	8	14	30	1.72
40634--40681	22	2.2	22	81	7	53	47	6	14	31	1.69
47904--47941	20	1.9	19	94	5	67	50	10	7	31	1.66
48767--48824	31	1.9	30	89	6	91	32	15	27	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50645--50678	15	2.3	15	89	0	50	38	11	0	50	1.39
50700--50758	31	1.9	31	89	0	91	27	15	8	49	1.73
51792--51888	45	2.2	45	84	1	124	37	5	19	38	1.74
54978--55007	15	1.9	16	93	6	53	0	13	3	83	0.77
56270--56427	84	1.9	84	92	3	266	37	9	1	50	1.46
56507--56613	50	2.2	47	82	9	119	39	4	1	54	1.32
67477--67607	45	2.9	46	87	6	205	20	3	17	58	1.51
68088--68137	18	2.8	19	70	11	52	38	30	6	26	1.80
68349--68854	132	3.8	133	94	2	858	28	22	22	27	1.99
68866--69134	64	4.2	64	96	0	486	29	23	15	30	1.96
68866--69153	127	2.3	127	93	3	485	29	22	17	30	1.97
69984--70023	21	2.0	21	85	5	55	30	17	15	37	1.90
71162--71397	124	1.9	124	84	3	314	22	24	26	26	2.00
71164--71424	124	2.1	124	81	5	296	22	23	26	27	2.00
71330--71586	137	1.9	137	81	4	313	24	21	26	27	1.99
72241--72320	30	2.6	31	86	5	101	30	17	15	37	1.90
74822--74889	24	2.8	24	91	4	102	33	5	1	58	1.31
74846--74897	16	3.3	15	73	7	50	32	1	1	63	1.16

Tables:   1

The End!