Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012918.1 Corchorus olitorius cultivar O-4 contig12951, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24673

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1331--1387
27
2.2
26
81
15
64
24
8
1
64
1.31
3532--3574
21
2.0
21
95
0
77
39
20
25
13
1.90
3922--3960
18
2.2
17
86
9
51
2
20
0
76
0.90
7097--7143
21
2.2
21
96
0
85
34
21
4
40
1.73
11593--11661
34
2.0
34
97
0
129
42
8
4
44
1.55
13326--13367
21
2.0
21
90
0
66
26
16
21
35
1.94
19493--19533
21
1.9
22
90
5
66
58
2
24
14
1.49
19726--19767
1
42.0
1
95
0
75
0
2
0
97
0.16
19726--19773
8
5.7
9
95
5
59
0
6
0
93
0.34
24226--24255
2
15.0
2
100
0
60
50
0
0
50
1.00
24387--24427
20
2.0
20
100
0
82
29
4
14
51
1.63

Tables:   1

The End!