Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012926.1 Corchorus olitorius cultivar O-4 contig12959, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7106
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28


Found at i:4633 original size:12 final size:13

Alignment explanation


    Indices: 4599--4631  Score: 50
    Period size: 12  Copynumber: 2.6  Consensus size: 13

       4589 TTCTTGCACA

                       * 
       4599 TTTAATTTTA-AT
          1 TTTAATTTTATTT

                         
       4611 TTTAATTTTATTT
          1 TTTAATTTTATTT

                    
       4624 TTTAATTT
          1 TTTAATTT

       4632 ATACACTAAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  12   10  0.53
  13    9  0.47

ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73


Consensus pattern (13 bp):   
TTTAATTTTATTT

Found at i:6725 original size:29 final size:28

Alignment explanation


    Indices: 6683--6738  Score: 87
    Period size: 29  Copynumber: 2.0  Consensus size: 28

       6673 TTAGGATTAG

                                        
       6683 TTATTTATGCTTTAATTTTCAA-TTTCT
          1 TTATTTATGCTTTAATTTTCAAGTTTCT

                                         
       6710 TTATCTTATGTCTTTAATTTTCAAGTTTC
          1 TTAT-TTATG-CTTTAATTTTCAAGTTTC

       6739 ATTAATAAAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  27    4  0.15
  28    5  0.19
  29   13  0.50
  30    4  0.15

ACGTcount: A:0.21, C:0.12, G:0.05, T:0.61


Consensus pattern (28 bp):   
TTATTTATGCTTTAATTTTCAAGTTTCT
Done.