Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012927.1 Corchorus olitorius cultivar O-4 contig12960, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89822

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7728--7762
3
11.7
3
100
0
70
34
0
0
65
0.93
14266--14295
4
7.5
4
92
0
51
0
26
3
70
1.03
16253--16355
51
2.0
51
83
3
127
41
13
24
20
1.88
19619--19677
27
2.2
27
87
0
82
30
33
3
32
1.74
21793--21844
20
2.8
19
73
21
56
15
34
19
30
1.93
21793--21877
19
4.7
18
69
13
59
18
37
17
25
1.93
21793--21949
73
2.1
74
82
8
196
19
35
17
26
1.95
21793--21951
36
4.4
37
78
5
171
19
36
17
26
1.94
26132--26184
25
2.2
23
83
6
61
28
9
5
56
1.54
27584--27612
5
6.0
5
92
8
51
82
0
17
0
0.66
27585--27613
14
2.1
14
100
0
58
86
0
13
0
0.58
34327--34464
53
2.6
52
88
2
204
30
15
18
35
1.92
36262--36307
2
22.5
2
95
4
83
50
2
0
47
1.13
36805--37086
140
2.0
140
97
0
537
35
11
11
41
1.78
51057--51130
22
3.5
21
78
7
69
44
8
13
33
1.73
51520--51697
85
2.1
86
88
2
259
48
7
10
33
1.67
51815--51868
19
2.7
21
70
18
53
48
3
9
38
1.53
56834--56879
2
23.0
2
100
0
92
50
0
0
50
1.00
57740--57803
26
2.4
27
79
5
78
45
10
15
28
1.80
59266--60325
198
5.3
200
88
3
1507
33
14
18
33
1.91
59266--60323
399
2.7
399
90
2
1646
33
13
18
33
1.90
66602--66636
18
1.9
18
88
0
52
25
14
8
51
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75666--75694
14
2.1
14
100
0
58
51
6
20
20
1.70
77930--78934
199
5.1
199
87
2
1359
34
17
13
34
1.90
78922--78977
24
2.3
25
84
3
69
42
5
5
46
1.49
78995--79059
20
3.2
20
68
10
51
27
7
10
53
1.62
78993--79062
21
3.4
21
71
11
63
28
7
11
52
1.63
84517--84557
21
1.9
22
85
5
57
78
0
17
4
0.93

Tables:   1

The End!