Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012928.1 Corchorus olitorius cultivar O-4 contig12961, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9353
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:8748 original size:17 final size:18

Alignment explanation


    Indices: 8709--8746  Score: 69
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       8699 CACATAGATA

                              
       8709 TTTT-GTTTTCTTCTAGT
          1 TTTTAGTTTTCTTCTAGT

                              
       8726 TTTTAGTTTTCTTCTAGT
          1 TTTTAGTTTTCTTCTAGT

               
       8744 TTT
          1 TTT

       8747 AGGCAAGGGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17    4  0.20
  18   16  0.80

ACGTcount: A:0.08, C:0.11, G:0.11, T:0.71


Consensus pattern (18 bp):   
TTTTAGTTTTCTTCTAGT
Done.