Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012929.1 Corchorus olitorius cultivar O-4 contig12962, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2377
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31


Found at i:1992 original size:15 final size:15

Alignment explanation


    Indices: 1962--2011  Score: 91
    Period size: 15  Copynumber: 3.3  Consensus size: 15

       1952 ATTGGGGGAT

                            
       1962 AATCAATCCAAAAAAC
          1 AATCAATCC-AAAAAC

                           
       1978 AATCAATCCAAAAAC
          1 AATCAATCCAAAAAC

                           
       1993 AATCAATCCAAAAAC
          1 AATCAATCCAAAAAC

                
       2008 AATC
          1 AATC

       2012 CAACAACAAA


Statistics
Matches: 34,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  15   25  0.74
  16    9  0.26

ACGTcount: A:0.60, C:0.26, G:0.00, T:0.14


Consensus pattern (15 bp):   
AATCAATCCAAAAAC

Done.