Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012931.1 Corchorus olitorius cultivar O-4 contig12964, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54121

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8769--8830
32
2.0
32
96
3
117
14
9
11
64
1.49
9465--9504
20
2.0
20
100
0
80
35
5
25
35
1.78
16304--16774
177
2.7
177
81
2
532
35
15
14
34
1.88
17983--18283
151
2.0
151
86
3
419
30
17
17
34
1.93
18157--18398
127
1.9
127
88
3
371
33
15
22
28
1.94
23085--23109
5
5.0
5
100
0
50
60
0
0
40
0.97
23212--23311
22
4.6
22
80
6
114
39
15
10
36
1.80
23212--23311
43
2.3
44
82
5
123
39
15
10
36
1.80
24330--24404
28
2.7
28
87
2
98
18
16
25
40
1.91
32140--32186
11
3.9
12
88
5
60
72
2
14
10
1.21
32591--32617
14
1.9
14
100
0
54
81
7
0
11
0.87
33406--33804
169
2.4
169
84
0
521
29
19
18
33
1.95
33815--33854
20
2.0
20
90
0
62
25
25
22
27
2.00
33898--34019
63
1.9
63
80
6
140
19
13
17
49
1.80
34488--34529
21
2.0
21
95
0
75
19
19
30
30
1.96
35393--35439
26
1.9
24
87
12
69
27
27
4
40
1.75
35450--35487
8
4.6
8
93
6
67
57
15
0
26
1.38
35450--35487
17
2.3
16
95
4
67
57
15
0
26
1.38
36393--36421
15
1.9
15
100
0
58
51
27
6
13
1.66
37008--37088
33
2.5
33
83
4
92
23
8
23
44
1.81
37035--37138
33
3.2
31
82
10
127
25
6
24
44
1.78
37628--37665
15
2.5
15
100
0
76
21
10
23
44
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38955--38996
21
2.0
21
100
0
84
19
19
28
33
1.96
41418--41498
14
5.5
14
71
11
72
34
8
18
38
1.82
49564--49815
133
1.9
133
96
0
468
25
22
22
29
1.99
51663--51689
12
2.2
12
100
0
54
7
14
7
70
1.32
52449--52488
15
2.6
16
92
4
64
12
10
12
65
1.49

Tables:   1

The End!