Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012936.1 Corchorus olitorius cultivar O-4 contig12969, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65493

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
905--947
3
14.3
3
80
0
50
32
2
4
60
1.30
6001--6056
28
1.9
30
85
7
80
35
3
16
44
1.65
9606--9636
5
6.2
5
100
0
62
0
58
0
41
0.98
17634--17659
12
2.2
12
100
0
52
7
15
7
69
1.35
18561--19035
235
2.0
235
100
0
950
27
13
18
39
1.89
26846--26888
16
2.7
15
86
10
59
11
9
13
65
1.48
28450--28487
17
2.2
17
86
9
51
13
36
13
36
1.83
32815--32981
81
2.0
82
89
1
255
25
16
12
45
1.82
32806--33070
81
3.3
78
80
7
230
24
15
13
47
1.81
32806--33071
41
6.5
41
81
8
267
24
15
13
46
1.81
38523--38566
21
2.1
21
95
0
79
40
20
9
29
1.83
41207--41247
21
2.0
21
90
0
64
24
14
4
56
1.58
44463--44527
11
5.9
11
96
0
121
35
18
9
36
1.83
44893--44964
31
2.4
31
83
2
83
43
19
12
25
1.86
45973--46046
22
3.2
22
76
14
85
13
18
25
41
1.87
53586--53846
134
1.9
133
86
3
362
49
2
9
38
1.48
54548--54611
31
2.1
30
85
11
85
64
10
3
21
1.40
54539--54608
31
2.3
29
79
16
72
64
10
4
21
1.41
55238--55635
201
2.0
201
97
0
751
31
20
14
33
1.93
57191--57232
3
14.0
3
100
0
84
33
0
0
66
0.92
63696--63763
27
2.5
27
85
2
91
17
16
23
42
1.88

Tables:   1

The End!