Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012941.1 Corchorus olitorius cultivar O-4 contig12974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24826

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2437--2756
166
1.9
163
87
4
464
30
19
18
30
1.96
3405--3446
22
1.9
22
85
0
57
42
26
19
11
1.85
8869--8906
14
2.8
14
84
4
51
55
2
5
36
1.37
8893--9146
123
2.0
126
88
6
381
47
1
11
39
1.49
9796--9857
31
2.0
31
87
0
88
45
6
19
29
1.75
10621--10661
2
20.5
2
90
9
66
51
2
0
46
1.14
10621--10669
10
4.5
11
89
7
66
51
4
0
44
1.20
14735--14764
14
2.1
14
93
0
51
30
3
0
66
1.07
16923--16947
9
2.8
9
100
0
50
0
0
16
84
0.63
18377--19044
22
30.6
21
66
17
115
38
17
8
36
1.80
18389--18867
22
22.0
22
67
16
167
37
17
8
35
1.81
18543--19503
44
21.9
43
68
13
243
36
18
9
35
1.83
18565--18670
46
2.4
44
84
6
124
38
14
14
33
1.86
18544--18822
66
4.2
67
71
13
190
38
17
10
33
1.85
18958--19061
22
4.7
22
73
14
81
36
14
6
42
1.72
19111--19251
22
6.5
22
77
4
117
34
17
11
36
1.85
19335--19503
65
2.6
66
76
7
173
34
18
10
36
1.86
19261--19510
22
11.4
22
75
6
161
34
20
9
35
1.85
19515--19646
21
6.0
22
69
11
74
41
15
7
34
1.76
19515--19578
22
3.0
22
76
4
67
39
17
6
37
1.75
19111--19576
249
1.9
249
80
9
549
35
18
9
36
1.84
19952--19988
14
2.5
15
91
4
58
48
0
16
35
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22221--22281
31
2.0
31
96
3
115
29
18
6
45
1.74
22317--22494
93
1.9
93
94
0
311
32
14
1
51
1.52

Tables:   1

The End!