Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012943.1 Corchorus olitorius cultivar O-4 contig12976, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1939
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:1222 original size:21 final size:21

Alignment explanation


    Indices: 1196--1291  Score: 167
    Period size: 21  Copynumber: 4.6  Consensus size: 21

       1186 AAGATGCTAG

                                  
       1196 AAGCTCATTGGAGCAA-GTTCC
          1 AAGCTCATTGGAG-AAGGTTCC

                                 
       1217 AAGCTCATTGGAGAAGGTTCC
          1 AAGCTCATTGGAGAAGGTTCC

                                 
       1238 AAGCTCATTGGAGAAGGTTCC
          1 AAGCTCATTGGAGAAGGTTCC

                               * 
       1259 AAGCTCATTGGAGAAGGTTTC
          1 AAGCTCATTGGAGAAGGTTCC

                        
       1280 AAGCTCATTGGA
          1 AAGCTCATTGGA

       1292 ATTGCCTAAG


Statistics
Matches: 73,  Mismatches: 1, Indels: 2
        0.96            0.01        0.03

Matches are distributed among these distances:
  20    2  0.03
  21   71  0.97

ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25


Consensus pattern (21 bp):   
AAGCTCATTGGAGAAGGTTCC

Done.