Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012945.1 Corchorus olitorius cultivar O-4 contig12978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2657
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32


Found at i:2090 original size:31 final size:31

Alignment explanation


    Indices: 2052--2121  Score: 131
    Period size: 31  Copynumber: 2.3  Consensus size: 31

       2042 GGAATTAAGC

                                           
       2052 ACCTTTCTTACCATGCCATGTGTTGATGACT
          1 ACCTTTCTTACCATGCCATGTGTTGATGACT

                                           
       2083 ACCTTTCTTACCATGCCATGTGTTGATGACT
          1 ACCTTTCTTACCATGCCATGTGTTGATGACT

            *       
       2114 GCCTTTCT
          1 ACCTTTCT

       2122 CCATATGACT


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   38  1.00

ACGTcount: A:0.17, C:0.27, G:0.16, T:0.40


Consensus pattern (31 bp):   
ACCTTTCTTACCATGCCATGTGTTGATGACT

Done.