Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012946.1 Corchorus olitorius cultivar O-4 contig12979, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5905
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34


Found at i:985 original size:35 final size:35

Alignment explanation


    Indices: 920--986  Score: 89
    Period size: 35  Copynumber: 1.9  Consensus size: 35

        910 GATCCTCTTT

                   *                 *         
        920 GATATTGGAGTTAGTAGGATATTAATGTGTTTGGA
          1 GATATTGAAGTTAGTAGGATATTAAGGTGTTTGGA

                           *  * *           
        955 GATATTGAAGTTAGTGGGGTTTTAAGGTGTTT
          1 GATATTGAAGTTAGTAGGATATTAAGGTGTTT

        987 AAAGAGCTTA


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  35   27  1.00

ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42


Consensus pattern (35 bp):   
GATATTGAAGTTAGTAGGATATTAAGGTGTTTGGA
Done.