genome.fa.s12947.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012947.1 Corchorus olitorius cultivar O-4 contig12980, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21455

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3611--3677	34	2.0	34	93	0	116	17	37	17	26	1.93
4920--4977	27	2.2	26	82	17	66	41	5	3	50	1.42
5637--5717	3	26.7	3	97	2	153	33	0	0	66	0.92
7117--7169	26	2.0	26	92	0	88	20	18	5	54	1.64
7126--7178	26	2.0	26	88	0	79	24	18	1	54	1.54
7252--7361	34	3.1	34	64	12	87	20	17	6	56	1.62
7226--7367	71	2.0	71	95	0	257	17	19	5	57	1.59
7464--7552	34	2.6	34	90	0	133	29	16	3	50	1.61
7606--7670	21	3.1	21	68	24	55	24	18	9	47	1.77
7607--7687	42	1.9	42	89	0	126	22	18	8	50	1.74
7664--7804	7	20.3	7	67	15	51	17	21	3	56	1.56
7721--7790	20	3.5	20	78	3	77	21	22	1	54	1.53
7703--7816	41	2.8	41	86	7	144	20	25	1	52	1.56
7740--7860	56	2.2	56	83	3	145	20	23	4	51	1.65
7622--8233	21	31.0	20	68	20	194	21	21	5	51	1.68
7832--7861	15	2.1	14	93	6	51	20	20	3	56	1.56
7912--8007	14	6.8	15	74	12	96	18	22	4	54	1.61
7921--8233	7	44.7	7	68	18	73	23	21	4	50	1.67
7846--8233	28	13.4	28	71	20	189	22	21	5	50	1.68
7969--8232	71	3.9	70	77	14	216	23	21	4	50	1.67
7991--8189	43	4.3	43	76	18	197	24	20	4	50	1.66
7921--8232	99	3.1	99	84	12	381	23	21	4	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11111--11135	1	25.0	1	100	0	50	0	0	0	100	0.00
11827--11983	76	2.1	76	100	0	314	44	14	16	24	1.85
12119--12149	16	1.9	16	93	0	53	0	19	0	80	0.71
12327--12375	26	2.0	24	92	8	80	36	12	16	34	1.86
13382--13531	22	6.9	22	77	9	130	40	9	14	36	1.78
13385--13531	44	3.4	45	80	6	151	40	9	13	36	1.77
13692--13740	15	3.3	15	72	11	55	53	0	0	46	1.00
13676--13765	30	3.0	30	95	3	155	47	0	0	52	1.00
17673--17814	31	4.7	30	79	6	126	38	12	17	31	1.87
17946--18010	31	2.2	31	86	5	89	23	20	9	47	1.78
18245--18278	17	2.0	17	88	11	52	32	0	0	67	0.91
18250--18283	14	2.3	15	90	5	52	32	0	0	67	0.91

Tables:   1

The End!