Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012949.1 Corchorus olitorius cultivar O-4 contig12982, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40980

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
408--468
25
2.4
25
100
0
122
29
11
8
50
1.67
2533--2557
7
3.6
7
100
0
50
28
28
12
32
1.92
5149--5187
18
2.2
18
85
0
51
30
0
28
41
1.57
5599--5643
9
5.0
9
89
10
74
77
0
11
11
0.99
6020--6066
6
8.0
6
83
4
51
85
8
0
6
0.75
6021--6076
23
2.5
21
86
11
76
87
5
0
7
0.67
6021--6075
7
7.9
7
77
20
53
87
5
0
7
0.68
7408--7723
69
4.6
69
90
0
479
25
27
16
30
1.97
7986--8244
99
2.6
101
82
3
315
28
16
14
40
1.88
8483--8799
30
10.8
30
89
2
475
20
12
19
47
1.82
8883--8943
30
2.0
30
83
0
77
22
18
11
47
1.80
14107--14142
2
18.0
2
94
0
63
47
0
0
52
1.00
19509--19584
32
2.4
32
82
4
91
19
22
25
32
1.97
23335--23670
113
3.0
112
88
2
503
30
21
14
33
1.94
23790--23833
19
2.3
19
100
0
88
50
15
20
13
1.78
24999--25025
2
13.5
2
100
0
54
48
0
0
51
1.00
25232--25297
32
2.1
32
88
0
96
43
6
7
42
1.57
27227--27292
32
2.1
32
91
0
105
42
7
6
43
1.57
27874--27904
16
1.9
16
93
0
53
51
9
6
32
1.60
37909--37974
32
2.1
32
94
0
114
42
7
7
42
1.61

Tables:   1

The End!