Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012950.1 Corchorus olitorius cultivar O-4 contig12983, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28834

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15129--15254
22
5.8
22
71
7
87
43
11
7
37
1.70
15130--15257
44
2.9
44
78
6
136
43
11
7
36
1.70
15260--15338
21
3.8
21
75
11
72
25
17
11
45
1.82
15295--15335
22
1.9
21
85
5
55
26
19
9
43
1.82
20197--20392
22
9.0
22
72
8
96
41
7
14
36
1.73
20197--20387
44
4.4
44
75
5
174
42
7
13
36
1.72
20225--20390
88
1.9
88
86
2
235
41
7
14
36
1.75
20462--20871
22
18.9
22
72
15
250
37
9
17
35
1.83
20490--20871
44
8.8
44
75
12
279
37
9
16
35
1.82
20471--20847
89
4.3
88
72
12
262
37
10
17
35
1.84
20835--20883
22
2.2
22
88
0
71
51
4
14
30
1.61
23496--23708
22
9.5
22
73
10
139
39
17
11
30
1.85
23771--23824
22
2.5
22
81
6
65
33
18
9
38
1.83
23845--24084
22
10.8
22
66
15
111
34
14
10
40
1.80
23966--24084
44
2.7
44
82
2
132
33
15
12
38
1.85
26945--27088
22
6.6
20
75
10
90
38
16
12
32
1.86
26972--27401
44
9.7
44
70
10
169
35
18
12
34
1.88
26946--27088
66
2.2
65
83
3
171
38
16
11
32
1.86
27130--27179
22
2.2
23
85
3
66
40
24
10
26
1.86
27191--27407
22
10.0
22
71
13
153
30
18
12
37
1.88
27301--27421
44
2.8
44
85
2
154
32
14
14
39
1.85
28189--28259
6
11.7
6
93
3
124
1
1
15
81
0.83

Tables:   1

The End!