genome.fa.s12951.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012951.1 Corchorus olitorius cultivar O-4 contig12984, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72114

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009--1034	6	4.3	6	100	0	52	50	0	15	34	1.45
5939--5977	21	1.9	20	89	5	60	30	12	28	28	1.93
13167--13215	23	2.1	23	88	0	71	44	14	8	32	1.74
20759--21248	184	2.7	183	92	2	777	31	20	17	30	1.95
21493--21543	22	2.3	22	83	6	59	41	9	9	39	1.71
24235--24288	27	2.0	27	89	3	83	40	29	12	16	1.86
24562--24675	50	2.2	50	81	7	122	26	24	12	36	1.91
24582--24688	50	2.1	50	87	3	153	26	24	12	37	1.90
24668--24720	23	2.3	23	93	0	97	15	33	13	37	1.86
24618--24767	73	2.1	73	92	2	248	20	29	13	36	1.91
24691--24838	50	2.9	50	92	1	233	22	28	13	35	1.92
24946--25102	68	2.3	68	91	1	242	26	18	28	27	1.98
25740--25890	50	3.0	50	81	5	189	35	12	17	33	1.88
33892--34052	78	2.1	78	92	0	268	50	0	13	34	1.46
34143--34192	6	8.5	6	95	4	93	50	0	16	34	1.45
36875--36902	11	2.5	11	100	0	56	21	0	0	78	0.75
36977--37056	18	4.9	15	71	16	70	8	3	53	33	1.50
37019--37062	18	2.4	18	88	0	61	6	4	56	31	1.46
38370--38429	29	2.1	29	93	0	102	23	18	33	25	1.97
44133--44185	27	1.9	28	92	3	90	47	13	5	33	1.66
50505--50823	158	2.0	159	95	0	577	43	19	8	27	1.80
60121--60159	3	13.0	3	100	0	78	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61797--62542	54	13.8	54	89	3	1056	28	19	5	47	1.71

Tables:   1

The End!