Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012956.1 Corchorus olitorius cultivar O-4 contig12989, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31658

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
400--477
27
2.9
27
90
0
120
34
25
19
20
1.96
1821--1851
2
15.5
2
100
0
62
51
0
0
48
1.00
6523--6547
6
4.2
6
100
0
50
84
0
0
16
0.63
6505--6545
21
2.0
21
85
0
55
78
0
4
17
0.93
8505--8548
3
15.0
3
95
4
81
34
0
0
65
0.93
14236--14438
52
3.9
52
90
1
309
35
19
14
30
1.92
14349--14441
28
3.5
28
67
16
88
32
20
15
32
1.93
14400--14454
28
2.0
28
85
7
76
32
20
14
32
1.92
15125--15324
101
2.0
101
96
0
373
36
12
33
18
1.88
22596--22623
13
2.2
13
100
0
56
64
7
7
21
1.43
22903--22938
19
1.9
18
88
5
54
41
5
22
30
1.76
30469--30552
40
2.1
39
82
12
100
44
13
27
15
1.83
31097--31121
12
2.1
12
100
0
50
16
24
8
52
1.70

Tables:   1

The End!