Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012958.1 Corchorus olitorius cultivar O-4 contig12991, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5575
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:4654 original size:74 final size:73

Alignment explanation


    Indices: 4534--4688  Score: 267
    Period size: 74  Copynumber: 2.1  Consensus size: 73

       4524 ATATAGATAA

                                                                             
       4534 TATTTTTTAAATGTAAAATCGTTCACTTTTATATTTTTTCATTTTATCTATACTAATAAGTTCTT
          1 TATTTTTTAAATGTAAAATCGTTCACTTTTATATTTTTTCATTTTATCTATACTAATAAGTTCTT

                    
       4599 AATTTGAT
         66 AATTTGAT

                                  *                          *               
       4607 TATTTTTGGTAAATGTAAAAT-TTTCACTTTTATATTTTTTCATTTTATTTATACTAATAAGTTC
          1 TATTTTT--TAAATGTAAAATCGTTCACTTTTATATTTTTTCATTTTATCTATACTAATAAGTTC

                      
       4671 TTAATTTGAT
         64 TTAATTTGAT

                    
       4681 TATTTTTT
          1 TATTTTTT

       4689 GGGTTTGCAT


Statistics
Matches: 78,  Mismatches: 2, Indels: 5
        0.92            0.02        0.06

Matches are distributed among these distances:
  72    1  0.01
  73    7  0.09
  74   58  0.74
  75   12  0.15

ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57


Consensus pattern (73 bp):   
TATTTTTTAAATGTAAAATCGTTCACTTTTATATTTTTTCATTTTATCTATACTAATAAGTTCTT
AATTTGAT
Done.