Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012962.1 Corchorus olitorius cultivar O-4 contig12995, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16551

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36--89
21
2.5
21
84
3
63
37
11
5
46
1.63
258--361
46
2.3
44
85
6
138
40
13
9
36
1.77
258--383
68
1.9
67
85
5
173
38
15
9
36
1.80
62--552
22
22.5
21
70
13
228
37
15
9
37
1.80
664--998
22
15.2
22
74
7
232
33
15
9
41
1.79
664--949
132
2.2
132
93
3
488
33
14
8
42
1.77
1934--1981
2
23.5
2
87
4
69
47
2
4
45
1.33
12658--12689
2
16.0
2
100
0
64
50
0
0
50
1.00
12992--13041
25
2.0
25
100
0
100
36
20
32
12
1.89
13673--13709
19
1.9
19
94
0
65
16
35
13
35
1.88
13760--13817
19
2.9
19
87
5
80
29
22
12
36
1.90

Tables:   1

The End!