Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012963.1 Corchorus olitorius cultivar O-4 contig12996, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 874

Length: 1458
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38


Found at i:1358 original size:36 final size:36

Alignment explanation


    Indices: 1311--1380  Score: 106
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       1301 TTCAATAACT

                           *                     
       1311 TTACATCTTTTGTGATTTTTG-TTATCATATTTCTTA
          1 TTACATCTTTTGT-AATTTTGATTATCATATTTCTTA

                  *                           
       1347 TTACATTTTTTGTAATTTTGATTATCATATTTCT
          1 TTACATCTTTTGTAATTTTGATTATCATATTTCT

       1381 CCAAAATCTC


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  35    6  0.19
  36   25  0.81

ACGTcount: A:0.21, C:0.10, G:0.07, T:0.61


Consensus pattern (36 bp):   
TTACATCTTTTGTAATTTTGATTATCATATTTCTTA
Done.