Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012965.1 Corchorus olitorius cultivar O-4 contig12998, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26555

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1047--1116
36
1.9
36
91
0
113
21
10
8
60
1.55
2416--2472
30
2.0
28
86
6
78
54
0
21
24
1.45
2862--3012
25
6.0
25
86
12
213
15
15
30
37
1.90
2862--3012
49
3.0
49
91
4
241
15
15
30
37
1.90
7684--7764
39
2.0
40
88
2
119
50
8
3
37
1.51
8741--8810
36
1.9
36
91
0
113
60
8
10
21
1.55
10078--10190
58
1.9
58
91
3
183
33
19
14
32
1.92
13167--13200
11
3.0
11
95
4
59
0
11
0
88
0.52
13275--13303
5
6.0
5
92
8
51
82
0
0
17
0.66
15808--15842
11
3.2
11
91
0
61
0
2
17
80
0.84
22802--22854
27
2.0
28
85
7
74
16
24
11
47
1.80

Tables:   1

The End!