Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012966.1 Corchorus olitorius cultivar O-4 contig12999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12325

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
203--442
126
1.9
124
84
10
317
51
0
12
35
1.45
1053--1148
31
3.1
30
89
4
138
31
15
10
42
1.81
1272--1345
29
2.5
30
86
4
96
44
13
17
24
1.85
3001--3041
11
3.5
12
81
15
50
60
29
0
9
1.28
3738--3782
20
2.2
21
88
4
65
62
31
2
4
1.27
4779--4867
45
2.0
45
97
0
169
29
19
30
21
1.97
5914--6279
195
1.9
195
89
4
567
29
14
15
40
1.87
8959--8988
15
2.0
15
93
0
51
6
16
23
53
1.66
9966--10062
32
3.1
30
78
11
81
27
32
12
26
1.92

Tables:   1

The End!