Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012970.1 Corchorus olitorius cultivar O-4 contig13003, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4252
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.34


Found at i:1519 original size:17 final size:16

Alignment explanation


    Indices: 1499--1546  Score: 51
    Period size: 17  Copynumber: 2.8  Consensus size: 16

       1489 TCCTTTCCCC

                             
       1499 TTTCTTATTCTTTTTCA
          1 TTTCTT-TTCTTTTTCA

                     *       
       1516 TTTCATTTTTTTTTTCA
          1 TTTC-TTTTCTTTTTCA

                *         
       1533 TTTTTTTTTCTTTT
          1 -TTTCTTTTCTTTT

       1547 GGCCAAGGCC


Statistics
Matches: 26,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  17   21  0.81
  18    5  0.19

ACGTcount: A:0.08, C:0.12, G:0.00, T:0.79


Consensus pattern (16 bp):   
TTTCTTTTCTTTTTCA

Found at i:1538 original size:12 final size:12

Alignment explanation


    Indices: 1516--1541  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1506 TTCTTTTTCA

                        
       1516 TTTCATTTTTTT
          1 TTTCATTTTTTT

                        
       1528 TTTCATTTTTTT
          1 TTTCATTTTTTT

              
       1540 TT
          1 TT

       1542 CTTTTGGCCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85


Consensus pattern (12 bp):   
TTTCATTTTTTT
Done.