Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012972.1 Corchorus olitorius cultivar O-4 contig13005, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31784

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4147--4215
25
2.8
25
90
0
111
15
8
20
55
1.67
5275--5320
18
2.5
19
79
13
51
54
2
41
2
1.25
9946--10089
74
2.0
73
80
6
166
36
10
18
34
1.85
10489--10552
15
4.2
15
80
7
67
76
1
9
12
1.08
10483--10520
17
2.2
18
85
4
51
76
2
5
15
1.08
10507--10549
14
2.9
14
89
6
59
72
0
13
13
1.13
10930--11021
29
3.2
28
75
14
89
73
11
4
9
1.21
11631--11826
50
3.9
50
92
1
304
31
15
14
37
1.88
12556--12972
69
6.0
68
88
3
559
27
28
16
27
1.97
12453--12641
105
1.8
104
89
1
297
29
29
13
28
1.94
15833--15874
7
5.9
7
91
2
66
83
2
14
0
0.75
23386--23414
14
2.0
15
93
6
51
72
6
6
13
1.26
24994--25035
15
2.7
15
92
3
66
64
14
9
11
1.50

Tables:   1

The End!