Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012974.1 Corchorus olitorius cultivar O-4 contig13007, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1317
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:892 original size:21 final size:19

Alignment explanation


    Indices: 866--908  Score: 50
    Period size: 21  Copynumber: 2.2  Consensus size: 19

        856 CACAACCCAT

                  *              
        866 ATGGGTGATCAGGCGAAACAC
          1 ATGGGTCATCAGGC-AAAC-C

                   *           
        887 ATGGGTCTTCAGGCAAACC
          1 ATGGGTCATCAGGCAAACC

               
        906 ATG
          1 ATG

        909 TGGGCACCCA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  19    4  0.20
  20    4  0.20
  21   12  0.60

ACGTcount: A:0.30, C:0.21, G:0.30, T:0.19


Consensus pattern (19 bp):   
ATGGGTCATCAGGCAAACC
Done.