genome.fa.s12976.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012976.1 Corchorus olitorius cultivar O-4 contig13009, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36994

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1175--1221	26	1.9	23	87	12	67	40	4	27	27	1.75
1175--1231	28	2.1	26	81	12	62	43	3	26	26	1.70
3631--3757	33	3.8	33	84	0	146	33	18	18	29	1.95
6466--6500	2	17.5	2	100	0	70	51	0	0	48	1.00
6507--6663	35	4.5	35	76	1	145	28	17	29	23	1.97
6641--6735	35	2.7	35	83	0	109	28	18	30	22	1.97
6507--6663	70	2.2	70	89	0	233	28	17	29	23	1.97
6507--6740	70	3.3	70	80	4	193	29	18	28	23	1.97
7681--7768	45	2.0	45	88	0	131	27	18	21	32	1.96
9032--9118	28	3.1	28	80	3	95	22	18	31	27	1.97
9149--9239	28	3.5	28	65	20	79	24	17	32	25	1.97
9405--9905	151	3.3	148	86	4	693	20	19	25	34	1.96
16200--16378	56	2.9	64	82	13	239	34	8	18	39	1.81
16686--16814	64	2.0	64	95	0	231	37	17	13	31	1.89
16972--17022	25	2.0	25	100	0	102	45	23	15	15	1.85
18462--18567	51	2.0	54	85	9	146	31	19	16	32	1.95
21204--21248	16	2.8	17	80	13	58	71	17	11	0	1.14
21755--21800	21	2.2	21	100	0	92	32	17	15	34	1.91
29371--29552	22	8.1	22	73	12	122	35	15	9	38	1.81
29371--29532	68	2.4	68	78	9	172	37	15	9	37	1.81
30514--30575	31	2.0	31	96	0	115	38	17	12	30	1.88
31160--31274	40	2.7	43	80	9	114	43	12	7	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31263--31302	20	1.9	22	85	10	57	35	15	7	42	1.75
32668--32875	22	9.7	22	73	14	141	37	11	14	37	1.82
32833--32871	21	1.9	20	94	0	60	35	12	10	41	1.77
33412--33654	22	11.2	22	76	10	146	36	11	14	37	1.82
33714--33878	22	7.6	21	76	9	136	38	9	17	34	1.83
33714--33849	65	2.1	66	83	6	170	36	9	19	35	1.84
34078--34161	44	1.9	44	85	4	116	39	5	13	41	1.68
34242--34270	2	15.0	2	92	7	51	51	0	0	48	1.00
34240--34270	15	2.1	15	100	0	62	51	0	0	48	1.00
34244--34269	13	2.0	13	100	0	52	53	0	0	46	1.00
34654--34678	6	4.2	6	100	0	50	20	32	32	16	1.94
34758--34813	28	2.0	28	92	0	94	48	21	5	25	1.71

Tables:   1

The End!