Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012978.1 Corchorus olitorius cultivar O-4 contig13011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5731
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:3630 original size:21 final size:21

Alignment explanation


    Indices: 3597--3645  Score: 55
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       3587 AAGAATTGTA

                          **     
       3597 GCTT-CTTGGAAATGGCTCTT
          1 GCTTCCTTGGAAATCCCTCTT

                    *            
       3617 GCTTCCTTTGAAATCCCTCTT
          1 GCTTCCTTGGAAATCCCTCTT

                    
       3638 GCATTCCT
          1 GC-TTCCT

       3646 AAAACATTGA


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  20    4  0.17
  21   15  0.62
  22    5  0.21

ACGTcount: A:0.14, C:0.29, G:0.16, T:0.41


Consensus pattern (21 bp):   
GCTTCCTTGGAAATCCCTCTT
Done.