genome.fa.s12979.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012979.1 Corchorus olitorius cultivar O-4 contig13012, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101271

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502--643	76	1.9	76	81	8	173	16	28	30	25	1.96
5098--5140	20	2.1	20	82	4	50	44	4	2	48	1.36
5261--5323	22	2.9	21	76	9	63	53	17	12	15	1.72
5261--5312	11	4.7	11	79	6	61	57	17	11	13	1.64
6876--6954	6	12.5	6	87	10	113	35	0	0	64	0.94
6854--6904	16	3.1	16	83	11	50	27	5	0	66	1.14
6876--6954	13	6.2	12	87	10	113	35	0	0	64	0.94
6876--6954	31	2.5	32	93	4	133	35	0	0	64	0.94
7189--7255	32	2.1	32	91	0	107	47	16	7	28	1.73
12509--12782	107	2.6	106	89	3	417	40	10	9	40	1.71
13234--13346	58	1.9	58	92	0	190	31	19	14	34	1.91
14053--14096	21	2.2	20	87	4	61	34	6	2	56	1.38
15070--15095	13	2.0	13	100	0	52	38	0	0	61	0.96
15077--15115	16	2.4	17	84	16	55	41	0	2	56	1.13
15534--15596	30	2.1	30	100	0	126	12	14	23	49	1.78
20547--20933	39	9.9	38	77	6	339	25	18	18	37	1.93
20547--20933	77	4.9	76	76	9	325	25	18	18	37	1.93
20512--20840	156	2.1	155	80	4	385	24	19	18	36	1.94
20547--20933	116	3.3	116	86	5	485	25	18	18	37	1.93
20547--20998	116	3.9	116	83	4	392	24	19	18	37	1.94
21447--21534	42	2.1	43	91	2	142	20	19	10	50	1.76
33575--33603	1	29.0	1	100	0	58	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33789--33859	30	2.4	30	87	0	106	25	19	16	38	1.93
44137--44207	35	2.0	36	91	2	117	40	16	14	28	1.87
47695--47755	29	2.1	30	84	9	81	47	3	4	44	1.41
58567--58600	2	17.0	2	100	0	68	50	0	0	50	1.00
61865--61912	12	4.1	11	80	20	53	85	2	8	4	0.80
61971--62037	31	2.2	31	86	2	91	25	17	28	28	1.98
62043--62100	17	3.0	20	80	17	77	46	3	0	50	1.18
63203--63272	34	2.1	34	100	0	140	32	25	18	22	1.97
63466--63490	12	2.1	12	100	0	50	32	8	24	36	1.84
63776--63846	37	1.9	37	88	5	108	36	16	8	38	1.80
65606--65657	26	2.0	25	81	3	59	59	5	3	30	1.39
68467--68516	20	2.5	20	90	0	73	64	0	2	34	1.05
68479--68520	20	2.1	20	100	0	84	59	0	0	40	0.97
68865--69196	178	1.9	178	86	5	474	35	14	15	35	1.87
69836--69894	28	2.1	28	96	0	109	32	25	8	33	1.86
73512--73536	13	1.9	13	100	0	50	12	8	8	72	1.29
75224--75283	13	5.1	13	66	22	51	48	13	0	38	1.42
75179--75283	23	4.5	23	85	8	140	49	13	0	37	1.42
85446--85560	36	3.2	36	94	0	194	39	16	13	30	1.88
85551--85673	33	3.7	33	84	4	167	31	13	19	34	1.91
85550--85768	30	7.0	30	76	10	145	34	15	17	32	1.91

Tables:   1

The End!