Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012981.1 Corchorus olitorius cultivar O-4 contig13014, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64037

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1913--1949
11
3.5
11
96
3
67
86
0
0
13
0.57
1914--1952
15
2.6
14
84
11
51
87
0
0
12
0.55
8240--8278
20
1.9
21
89
5
62
20
30
0
48
1.50
8237--8283
20
2.3
20
82
7
60
19
34
0
46
1.50
10707--11365
329
2.0
329
97
0
1255
30
19
19
30
1.96
13137--13163
9
3.0
9
100
0
54
44
0
33
22
1.53
13725--13782
31
1.9
31
86
6
84
24
12
6
56
1.59
13865--13922
22
2.8
21
72
15
57
70
1
5
22
1.16
14023--14110
45
2.0
45
95
0
158
36
9
18
36
1.82
22890--22977
29
3.0
29
73
8
79
28
31
22
17
1.96
27839--27882
11
3.9
11
81
3
52
0
9
18
72
1.10
28468--28501
18
1.9
17
94
5
59
76
8
14
0
1.01
32883--32916
18
1.9
17
94
5
59
0
14
8
76
1.01
33505--33556
22
2.2
24
86
10
72
67
19
9
3
1.35
33896--33937
11
3.7
11
83
3
57
78
16
4
0
0.91
33896--33937
6
7.3
6
84
10
52
78
16
4
0
0.91
40499--40530
16
2.1
16
94
5
57
50
12
6
31
1.65
48740--48770
2
15.5
2
93
0
53
48
3
0
48
1.17
48878--48936
10
5.9
10
88
4
84
30
20
18
30
1.96
49250--49300
10
5.2
9
88
9
57
35
13
21
29
1.92
53129--53355
22
10.5
21
73
16
130
41
10
13
34
1.78
53190--53376
44
4.3
44
75
10
172
42
10
12
34
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53214--53376
88
1.9
88
85
2
229
41
10
13
34
1.79
53546--53706
82
1.9
84
82
7
204
39
7
16
36
1.77
53461--54021
22
25.9
22
70
10
228
38
9
15
36
1.80
53984--54031
22
2.2
22
81
7
53
52
10
12
25
1.71
59605--59631
12
2.2
12
100
0
54
55
0
22
22
1.44

Tables:   1

The End!