Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012983.1 Corchorus olitorius cultivar O-4 contig13016, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34898
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Found at i:7998 original size:38 final size:38
Alignment explanation
Indices: 7902--8049 Score: 217
Period size: 38 Copynumber: 3.9 Consensus size: 38
7892 GGCTGTGCAT
*
7902 AGTGGACCCGTACCTCAGGGGGTTAAACTGATGGTAAAG
1 AGTGGACCCGTACCTCAGGGGGTTAAACTGTTGGT-AAG
* *
7941 AGTGGACCCATACCACAGGGGGTTAAACTGTTGGTAAG
1 AGTGGACCCGTACCTCAGGGGGTTAAACTGTTGGTAAG
* *
7979 AGTGGACCCGTGCCTCAGGGGGTTAAATTGTTGGTAAG
1 AGTGGACCCGTACCTCAGGGGGTTAAACTGTTGGTAAG
* *
8017 AGTGGACCCGTGCCTTAGGGGGTT-AACTGTTGG
1 AGTGGACCCGTACCTCAGGGGGTTAAACTGTTGG
8050 CTAGACTCGA
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
37 8 0.08
38 60 0.60
39 32 0.32
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.24
Consensus pattern (38 bp):
AGTGGACCCGTACCTCAGGGGGTTAAACTGTTGGTAAG
Found at i:8090 original size:6 final size:6
Alignment explanation
Indices: 8079--8110 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
8069 CGTTAACGGA
8079 TGATTG TGATTG TGATTG TGATTG TGATTG TG
1 TGATTG TGATTG TGATTG TGATTG TGATTG TG
8111 GTGCAGCCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.50
Consensus pattern (6 bp):
TGATTG
Found at i:10247 original size:16 final size:16
Alignment explanation
Indices: 10228--10267 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
10218 AGAATAATAA
*
10228 AAAAATTAAAAAAAAG
1 AAAAATGAAAAAAAAG
* *
10244 AAAAAAGAAAAAAAGG
1 AAAAATGAAAAAAAAG
10260 AAAAATGA
1 AAAAATGA
10268 TGAAGAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.07
Consensus pattern (16 bp):
AAAAATGAAAAAAAAG
Found at i:10254 original size:24 final size:24
Alignment explanation
Indices: 10209--10257 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
10199 GAGTGCATTC
*
10209 TTAAAAAAAAGAATAATAAAAAAA
1 TTAAAAAAAAGAATAAAAAAAAAA
*
10233 TTAAAAAAAAGAAAAAAGAAAAAAA
1 TTAAAAAAAAGAATAAA-AAAAAAA
10258 GGAAAAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (24 bp):
TTAAAAAAAAGAATAAAAAAAAAA
Found at i:10263 original size:25 final size:24
Alignment explanation
Indices: 10211--10264 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
10201 GTGCATTCTT
* * **
10211 AAAAAAAAGAATAATAAAAAAATT
1 AAAAAAAAGAAAAAGAAAAAAAGG
10235 AAAAAAAAGAAAAAAGAAAAAAAGG
1 AAAAAAAAG-AAAAAGAAAAAAAGG
10260 AAAAA
1 AAAAA
10265 TGATGAAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.07
Consensus pattern (24 bp):
AAAAAAAAGAAAAAGAAAAAAAGG
Found at i:11449 original size:88 final size:88
Alignment explanation
Indices: 11347--11831 Score: 684
Period size: 88 Copynumber: 5.6 Consensus size: 88
11337 AGTTGACTCA
* * *
11347 GGGTGGTCTTTTCTTCAATTTATGTC-GAAATGATCGGGGGTGGTTTTTCTTCAATTCTTCAATG
1 GGGTGGTC-TTTCTTCAGTTTATTTCAG-AATGATCGGGGGTGGTCTTTCTTCAATTCTTCAATG
*
11411 CTTCAATTTATTTCAGAATGATTGG
64 CTTCAATTTATTTCAGAATGATCGG
* * *
11436 GGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCAGGGGTGGTCTTTCTTCAATTCTTCACTTCT
1 GGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAATTCTTCAATGCT
*
11501 TCAATTTATTTCAGAATAATCGG
66 TCAATTTATTTCAGAATGATCGG
* * *
11524 GGGTGGTCTTTCTTCAATTTTTTTTCAGAATGATCGGGGGTGGTCTTTATTCAATTCTTCAATGC
1 GGGTGGTCTTTCTTC-AGTTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAATTCTTCAATGC
*
11589 TTCAAATTATTTCAGAATGATCGG
65 TTCAATTTATTTCAGAATGATCGG
*
11613 GGGTGTTCTTTCTTCAGTTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAA----T--A--CT
1 GGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAATTCTTCAATGCT
* *
11670 TTAATTTATTTCAGAATGATTGG
66 TCAATTTATTTCAGAATGATCGG
11693 GGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAATTCTTCAAT-CT
1 GGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAATTCTTCAATGCT
11757 TCAATTTATTTCAGAATGATCGG
66 TCAATTTATTTCAGAATGATCGG
* ** * **
11780 GGGTGGTCTTTCTACAGTTTATTTTGGGATGATCCAGGGTGGTCTTTCTTCA
1 GGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCA
11832 CTTTAGTTCC
Statistics
Matches: 355, Mismatches: 32, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
80 74 0.21
82 1 0.00
84 2 0.01
86 1 0.00
87 69 0.19
88 120 0.34
89 88 0.25
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (88 bp):
GGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAATTCTTCAATGCT
TCAATTTATTTCAGAATGATCGG
Found at i:11458 original size:36 final size:36
Alignment explanation
Indices: 11411--11747 Score: 145
Period size: 36 Copynumber: 8.2 Consensus size: 36
11401 TTCTTCAATG
**
11411 CTTCAATTTATTTCAGAATGATTGGGGGTGGTCTTT
1 CTTCAATTTATTTCAGAATGATCAGGGGTGGTCTTT
*
11447 CTTCAGTTTATTTCAGAATGATCAGGGGTGGTCTTT
1 CTTCAATTTATTTCAGAATGATCAGGGGTGGTCTTT
*
11483 CTTCAATTCTTCACTTCTTCA-ATTTATTTCAGAATAATCGGGGGTGGTCTTT
1 CTTCAA-T-TT-A--T-TTCAGA---A--T--G----ATCAGGGGTGGTCTTT
* *
11535 CTTCAATTTTTTTTCAGAATGATCGGGGGTGGTCTTT
1 CTTCAA-TTTATTTCAGAATGATCAGGGGTGGTCTTT
* * * *
11572 ATTCAATTCTTCAATGCTTCAAATTATTTCAGAATGATCGGGGGTGTTCTTT
1 CTTCAA-T-TT--AT--TTCAGA--A--T--G----ATCAGGGGTGGTCTTT
* *
11624 CTTCAGTTTATTTCAGAATGATCGGGGGTGGTCTTT
1 CTTCAATTTATTTCAGAATGATCAGGGGTGGTCTTT
**
11660 CTTCAATACTTTAATTTATTTCAGAATGATTGGGGGTGGTCTTT
1 C-T---T-C---AATTTATTTCAGAATGATCAGGGGTGGTCTTT
* *
11704 CTTCAGTTTATTTCAGAATGATCGGGGGTGGTCTTT
1 CTTCAATTTATTTCAGAATGATCAGGGGTGGTCTTT
11740 CTTCAATT
1 CTTCAATT
11748 CTTCAATCTT
Statistics
Matches: 241, Mismatches: 19, Indels: 82
0.70 0.06 0.24
Matches are distributed among these distances:
36 91 0.38
37 25 0.10
38 4 0.02
39 2 0.01
40 4 0.02
41 4 0.02
42 10 0.04
43 2 0.01
44 34 0.14
45 1 0.00
46 7 0.03
47 4 0.02
48 6 0.02
50 2 0.01
51 3 0.01
52 42 0.17
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.44
Consensus pattern (36 bp):
CTTCAATTTATTTCAGAATGATCAGGGGTGGTCTTT
Found at i:11560 original size:37 final size:37
Alignment explanation
Indices: 11497--11747 Score: 193
Period size: 36 Copynumber: 6.3 Consensus size: 37
11487 AATTCTTCAC
11497 TTCTTCAA-TTTATTTCAGAATAATCGGGGGTGGTCT
1 TTCTTCAATTTTATTTCAGAATAATCGGGGGTGGTCT
* *
11533 TTCTTCAATTTTTTTTCAGAATGATCGGGGGTGGTCTTTATT
1 TTCTTCAATTTTATTTCAGAATAATCGGGGGTGGTC-----T
* *
11575 CAATTCTTCAATGCTTCAAATTATTTCAGAATGATCGGGGGTGTTCT
1 ---TTCTTCAAT--TT-----TATTTCAGAATAATCGGGGGTGGTCT
* *
11622 TTCTTC-AGTTTATTTCAGAATGATCGGGGGTGGTCT
1 TTCTTCAATTTTATTTCAGAATAATCGGGGGTGGTCT
* *
11658 TTCTTCAATACTTTAATTTATTTCAGAATGATTGGGGGTGGTCT
1 TTCTTC-A-A---T--TTTATTTCAGAATAATCGGGGGTGGTCT
* *
11702 TTCTTC-AGTTTATTTCAGAATGATCGGGGGTGGTCT
1 TTCTTCAATTTTATTTCAGAATAATCGGGGGTGGTCT
11738 TTCTTCAATT
1 TTCTTCAATT
11748 CTTCAATCTT
Statistics
Matches: 179, Mismatches: 11, Indels: 49
0.75 0.05 0.21
Matches are distributed among these distances:
36 72 0.40
37 27 0.15
39 1 0.01
41 3 0.02
42 1 0.01
43 1 0.01
44 39 0.22
45 9 0.05
47 3 0.02
52 23 0.13
ACGTcount: A:0.20, C:0.14, G:0.22, T:0.44
Consensus pattern (37 bp):
TTCTTCAATTTTATTTCAGAATAATCGGGGGTGGTCT
Found at i:11643 original size:177 final size:168
Alignment explanation
Indices: 11347--11831 Score: 706
Period size: 177 Copynumber: 2.8 Consensus size: 168
11337 AGTTGACTCA
* *
11347 GGGTGGTCTTTTCTTCAATTTATGTC-GAAATGATCGGGGGTGGTTTTTCTTCAATTCTTCAATG
1 GGGTGGTC-TTTCTTCAATTTATTTCAG-AATGATCGGGGGTGGTCTTTCTTCAATTCTTCAATG
*
11411 CTTCAATTTATTTCAGAATGATTGGGGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCAGGGGT
64 CTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCAGGGGT
11476 GGTCTTTCTTCAATTCTTCACTTCTTCAATTTATTTCAGAATAATCGG
129 GGTCTTTCTTCAA----T-AC-T-TT-AATTTATTTCAGAATAATCGG
* *
11524 GGGTGGTCTTTCTTCAATTTTTTTTCAGAATGATCGGGGGTGGTCTTTATTCAATTCTTCAATGC
1 GGGTGGTCTTTCTTCAA-TTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAATTCTTCAATGC
* * *
11589 TTCAAATTATTTCAGAATGATCGGGGGTGTTCTTTCTTCAGTTTATTTCAGAATGATCGGGGGTG
65 TTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCAGGGGTG
* *
11654 GTCTTTCTTCAATACTTTAATTTATTTCAGAATGATTGG
130 GTCTTTCTTCAATACTTTAATTTATTTCAGAATAATCGG
*
11693 GGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAATTCTTCAAT-CT
1 GGGTGGTCTTTCTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAATTCTTCAATGCT
* ** *
11757 TCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTACAGTTTATTTTGGGATGATCCA-GGGTG
66 TCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAGTTTATTTCAGAATGAT-CAGGGGTG
11821 GTCTTTCTTCA
130 GTCTTTCTTCA
11832 CTTTAGTTCC
Statistics
Matches: 285, Mismatches: 20, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
167 68 0.24
168 44 0.15
169 35 0.12
170 2 0.01
171 1 0.00
172 2 0.01
173 1 0.00
176 9 0.03
177 122 0.43
178 1 0.00
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (168 bp):
GGGTGGTCTTTCTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAATTCTTCAATGCT
TCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAGTTTATTTCAGAATGATCAGGGGTGG
TCTTTCTTCAATACTTTAATTTATTTCAGAATAATCGG
Found at i:11711 original size:80 final size:80
Alignment explanation
Indices: 11578--11831 Score: 346
Period size: 80 Copynumber: 3.1 Consensus size: 80
11568 CTTTATTCAA
* * *
11578 TTCTTCAATGCTTCAAATTATTTCAGAATGATCGGGGGTGTTCTTTCTTCAGTTTATTTCAGAAT
1 TTCTTCAATACTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAGTTTATTTCAGAAT
11643 GATCGGGGGTGGTCT
66 GATCGGGGGTGGTCT
* *
11658 TTCTTCAATACTTTAATTTATTTCAGAATGATTGGGGGTGGTCTTTCTTCAGTTTATTTCAGAAT
1 TTCTTCAATACTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAGTTTATTTCAGAAT
11723 GATCGGGGGTGGTCT
66 GATCGGGGGTGGTCT
*
11738 TTCTTCAATTCTTCAATCTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTACAGTTTATT
1 TTCTTCAA----T--A-CTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAGTTTATT
** * **
11803 TTGGGATGATCCAGGGTGGTCT
59 TCAGAATGATCGGGGGTGGTCT
11825 TTCTTCA
1 TTCTTCA
11832 CTTTAGTTCC
Statistics
Matches: 154, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
80 83 0.54
84 1 0.01
86 1 0.01
87 69 0.45
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (80 bp):
TTCTTCAATACTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTTCAGTTTATTTCAGAAT
GATCGGGGGTGGTCT
Found at i:11771 original size:87 final size:88
Alignment explanation
Indices: 11658--11831 Score: 269
Period size: 87 Copynumber: 2.0 Consensus size: 88
11648 GGGGTGGTCT
* * *
11658 TTCTTCAATACTTTAATTTATTTCAGAATGATTGGGGGTGGTCTTTCTTCAGTTTATTTCAGAAT
1 TTCTTCAATACTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTACAGTTTATTTCAGAAT
**
11723 GATCGGGGGTGGTCTTTCTTCAA
66 GATCCAGGGTGGTCTTTCTTCAA
** *
11746 TTCTTCAAT-CTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTACAGTTTATTTTGGGAT
1 TTCTTCAATACTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTACAGTTTATTTCAGAAT
11810 GATCCAGGGTGGTCTTTCTTCA
66 GATCCAGGGTGGTCTTTCTTCA
11832 CTTTAGTTCC
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
87 69 0.88
88 9 0.12
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.44
Consensus pattern (88 bp):
TTCTTCAATACTTCAATTTATTTCAGAATGATCGGGGGTGGTCTTTCTACAGTTTATTTCAGAAT
GATCCAGGGTGGTCTTTCTTCAA
Found at i:11848 original size:36 final size:36
Alignment explanation
Indices: 11754--11849 Score: 102
Period size: 36 Copynumber: 2.7 Consensus size: 36
11744 AATTCTTCAA
**
11754 TCTTCAATTTATTTCAGAATGATCGGGGGTGGTCTT
1 TCTTCAATTTATTTCAGAATGATCCAGGGTGGTCTT
* * ** *
11790 TCTACAGTTTATTTTGGGATGATCCAGGGTGGTCTT
1 TCTTCAATTTATTTCAGAATGATCCAGGGTGGTCTT
* * *
11826 TCTTCACTTTAGTTCCGAATGATC
1 TCTTCAATTTATTTCAGAATGATC
11850 GAAAATGGTT
Statistics
Matches: 47, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.42
Consensus pattern (36 bp):
TCTTCAATTTATTTCAGAATGATCCAGGGTGGTCTT
Found at i:14475 original size:37 final size:35
Alignment explanation
Indices: 14434--14579 Score: 123
Period size: 37 Copynumber: 3.9 Consensus size: 35
14424 AAATACAAGT
*
14434 GTTTTCGTTTTTTAAGAAGAAGGGAAAGATCCCGCTA
1 GTTTTAGTTTTTTAAG--GAAGGGAAAGATCCCGCTA
*
14471 GTTTTAGTTTCTTTTTAGGAAGGGAAAGATCCCGCTA
1 GTTTTAG-TT-TTTTAAGGAAGGGAAAGATCCCGCTA
* * * * *
14508 GTTTTGGTTTCATCTT-AGGATGAGAAGGAATCCCACTA
1 GTTTTAGTTT--T-TTAAGGAAGGGAAAG-ATCCCGCTA
*
14546 GTTTTAGTTTCGTTTTAGGAAGGGAAAGATCCCG
1 GTTTTAGTTT--TTTAAGGAAGGGAAAGATCCCG
14580 TCAAAAGTTT
Statistics
Matches: 89, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
35 1 0.01
36 2 0.02
37 48 0.54
38 32 0.36
39 6 0.07
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (35 bp):
GTTTTAGTTTTTTAAGGAAGGGAAAGATCCCGCTA
Found at i:14549 original size:38 final size:37
Alignment explanation
Indices: 14452--14579 Score: 157
Period size: 37 Copynumber: 3.4 Consensus size: 37
14442 TTTTTAAGAA
* *
14452 GAAGGGAAAGATCCCGCTAGTTTTAGTTTCTTTTTAG
1 GAAGAGAAAGATCCCGCTAGTTTTAGTTTCATTTTAG
* * *
14489 GAAGGGAAAGATCCCGCTAGTTTTGGTTTCATCTTAG
1 GAAGAGAAAGATCCCGCTAGTTTTAGTTTCATTTTAG
* * * *
14526 GATGAGAAGGAATCCCACTAGTTTTAGTTTCGTTTTAG
1 GAAGAGAAAG-ATCCCGCTAGTTTTAGTTTCATTTTAG
*
14564 GAAGGGAAAGATCCCG
1 GAAGAGAAAGATCCCG
14580 TCAAAAGTTT
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
37 46 0.61
38 30 0.39
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (37 bp):
GAAGAGAAAGATCCCGCTAGTTTTAGTTTCATTTTAG
Found at i:19348 original size:17 final size:18
Alignment explanation
Indices: 19323--19356 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
19313 GATGCAATGC
19323 AAAAGACCTACCAATTAT
1 AAAAGACCTACCAATTAT
*
19341 AAAA-ACCTACCGATTA
1 AAAAGACCTACCAATTA
19357 AGTGAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.24, G:0.06, T:0.21
Consensus pattern (18 bp):
AAAAGACCTACCAATTAT
Found at i:19378 original size:22 final size:23
Alignment explanation
Indices: 19347--19391 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
19337 TTATAAAAAC
*
19347 CTACCGATT-AAGTGAATGTGCT
1 CTACCAATTAAAGTGAATGTGCT
19369 CTACCAATTAAAGTGAATGTGCT
1 CTACCAATTAAAGTGAATGTGCT
19392 ATGCACAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (23 bp):
CTACCAATTAAAGTGAATGTGCT
Found at i:19901 original size:39 final size:39
Alignment explanation
Indices: 19791--20107 Score: 334
Period size: 39 Copynumber: 8.1 Consensus size: 39
19781 TCTAAATTAA
* * * *
19791 GATTTTGAAATT-AGCTGATAAGGTAATGATCCTAAATAG
1 GATTCTGAAATTGA-CTGATAAAGCAATGATCCTGAATAG
* * * ** *
19830 GAATTTTGAAATTAACTAATATGGCAATGATCCTTAATAG
1 G-ATTCTGAAATTGACTGATAAAGCAATGATCCTGAATAG
* * *
19870 GACTCTGAAATTAACTGATAGAA-CAAAGATCCTGAATAG
1 GATTCTGAAATTGACTGATA-AAGCAATGATCCTGAATAG
* * *
19909 GATTTTGAAATTGACAGATAAAGCCATGATCCTGAATAG
1 GATTCTGAAATTGACTGATAAAGCAATGATCCTGAATAG
* * *
19948 GATTCGGAAATTCACTGATAATGCAATGATCCTGAATAG
1 GATTCTGAAATTGACTGATAAAGCAATGATCCTGAATAG
* *
19987 GATTCTGAACTTGTCTGATAAAGCAATGATCCTGAATAG
1 GATTCTGAAATTGACTGATAAAGCAATGATCCTGAATAG
* * *
20026 AATTCTGAAATCGA-TAGATAAAGCGATGATCCTGAATAG
1 GATTCTGAAATTGACT-GATAAAGCAATGATCCTGAATAG
* **
20065 GACTCTGAAATTGACAAATAAAGCAATGATCCTGAATAG
1 GATTCTGAAATTGACTGATAAAGCAATGATCCTGAATAG
20104 GATT
1 GATT
20108 GATAAAGCAA
Statistics
Matches: 232, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
38 3 0.01
39 195 0.84
40 33 0.14
41 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (39 bp):
GATTCTGAAATTGACTGATAAAGCAATGATCCTGAATAG
Found at i:20114 original size:66 final size:66
Alignment explanation
Indices: 20042--20173 Score: 210
Period size: 66 Copynumber: 2.0 Consensus size: 66
20032 GAAATCGATA
* * *
20042 GATAAAGCGATGATCCTGAATAGGACTCTGAAATTGACAAATAAAGCAATGATCCTGAATAGGAT
1 GATAAAGCAATGATCCTGAATAGAACTCTGAAATTGACAAATAAAGAAATGATCCTGAATAGGAT
20107 T
66 T
* * *
20108 GATAAAGCAATTATCCTGAATAGAATTCTGAAATTGACTAATAAAGAAATGATCCTGAATAGGAT
1 GATAAAGCAATGATCCTGAATAGAACTCTGAAATTGACAAATAAAGAAATGATCCTGAATAGGAT
20173 T
66 T
20174 CAAACAAAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (66 bp):
GATAAAGCAATGATCCTGAATAGAACTCTGAAATTGACAAATAAAGAAATGATCCTGAATAGGAT
T
Found at i:20139 original size:39 final size:38
Alignment explanation
Indices: 20104--20329 Score: 218
Period size: 39 Copynumber: 5.8 Consensus size: 38
20094 TCCTGAATAG
* *
20104 GATTGATAAAGCAATTATCCTGAATAGAATTCTGAAATT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAA-T
* * * ** *
20143 GACTAATAAAGAAATGATCCTGAATAGGATTCAAACAAA
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGA-AAT
* * *
20182 AATTCATAAAGTAATGATCCTGAATAGGATTCTGAAATT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAA-T
* * *
20221 GATAGATAAAGCAATGATCCTGAATAGGACTCTGAGATT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGA-AAT
** * *
20260 GACAGATAAAGCAATGATCCTGAACAGGAGTCTGAAAT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAAT
* * *
20298 CAATTCATAAAGAAATGATCCTGAATAGGATT
1 -GATTGATAAAGCAATGATCCTGAATAGGATT
20330 AAAACACATA
Statistics
Matches: 151, Mismatches: 32, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
38 4 0.03
39 144 0.95
40 3 0.02
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (38 bp):
GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAAT
Found at i:20191 original size:105 final size:105
Alignment explanation
Indices: 20002--20329 Score: 286
Period size: 105 Copynumber: 3.0 Consensus size: 105
19992 TGAACTTGTC
**
20002 TGATAAAGCAATGATCCTGAATAGAATTCTGAAATCGATAGATAAAGCGATGATCCTGAATAGGA
1 TGATAAAGCAATGATCCTGAATAGAATTCTGAAATCGATAGATAAAGAAATGATCCTGAATAGGA
* ** *
20067 CTCTGAAATTGACAAATAAAGCAATGATCCTGAATAGGAT
66 CTCTCAAATCAAAAAATAAAGCAATGATCCTGAATAGGAT
* *
20107 TGATAAAGCAATTATCCTGAATAGAATTCTGAAATTGACTA-ATAAAGAAATGATCCTGAATAGG
1 TGATAAAGCAATGATCCTGAATAGAATTCTGAAATCGA-TAGATAAAGAAATGATCCTGAATAGG
*
20171 A-T-TCAAA-CAAAAATTCATAAAGTAATGATCCTGAATAGGATTCTGAAATT
65 ACTCTCAAATCAAAAA---ATAAAGCAATGATCCTGAATA-G-----G--A-T
* * * * * * *
20221 GATAGATAAAGCAATGATCCTGAATAGGACTCTGAGATTGACAGATAAAGCAATGATCCTGAACA
1 --T-GATAAAGCAATGATCCTGAATAGAATTCTGAAATCGATAGATAAAGAAATGATCCTGAATA
* * *** *
20286 GGAGTCTGAAATCAATTCATAAAGAAATGATCCTGAATAGGAT
63 GGACTCTCAAATCAAAAAATAAAGCAATGATCCTGAATAGGAT
20329 T
1 T
20330 AAAACACATA
Statistics
Matches: 182, Mismatches: 21, Indels: 39
0.75 0.09 0.16
Matches are distributed among these distances:
102 3 0.02
103 4 0.02
104 1 0.01
105 78 0.43
106 4 0.02
108 1 0.01
109 1 0.01
111 2 0.01
113 1 0.01
114 1 0.01
116 3 0.02
117 75 0.41
118 1 0.01
119 4 0.02
120 3 0.02
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.26
Consensus pattern (105 bp):
TGATAAAGCAATGATCCTGAATAGAATTCTGAAATCGATAGATAAAGAAATGATCCTGAATAGGA
CTCTCAAATCAAAAAATAAAGCAATGATCCTGAATAGGAT
Found at i:20205 original size:66 final size:66
Alignment explanation
Indices: 20069--20205 Score: 145
Period size: 66 Copynumber: 2.1 Consensus size: 66
20059 GAATAGGACT
* * ** ***
20069 CTGAAATTGACAAATAAAGCAATGATCCTGAATAGGATTGATAAAGCAATTATCCTGAATAGAAT
1 CTGAAATTGACAAATAAAGAAATGATCCTGAATAGGATTCATAAAAAAATTATAAAGAATAGAAT
*
20134 T
66 C
*
20135 CTGAAATTGACTAATAAAGAAATGATCCTGAATAGGATTCA-AACAAAAATTCATAAAGTAAT-G
1 CTGAAATTGACAAATAAAGAAATGATCCTGAATAGGATTCATAA-AAAAATT-ATAAAG-AATAG
20198 -ATC
63 AATC
20201 CTGAA
1 CTGAA
20206 TAGGATTCTG
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
65 2 0.03
66 50 0.85
67 4 0.07
68 3 0.05
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.26
Consensus pattern (66 bp):
CTGAAATTGACAAATAAAGAAATGATCCTGAATAGGATTCATAAAAAAATTATAAAGAATAGAAT
C
Found at i:20230 original size:144 final size:144
Alignment explanation
Indices: 19963--20249 Score: 387
Period size: 144 Copynumber: 2.0 Consensus size: 144
19953 GGAAATTCAC
* * * * * *
19963 TGATAATGCAATGATCCTGAATAGGATTCTGAACTTGTCTGATAAAGCAATGATCCTGAATAGAA
1 TGATAAAGCAATGATCCTGAATAGAATTCTGAAATTGACTAATAAAGAAATGATCCTGAATAGAA
* *** * *
20028 TTCTGAAATCGATAGATAAAGCGATGATCCTGAATAGGACTCTGAAATTGACAAATAAAGCAATG
66 TTCTAAAAAAAATACATAAAGCAATGATCCTGAATAGGACTCTGAAATTGACAAATAAAGCAATG
20093 ATCCTGAATAGGAT
131 ATCCTGAATAGGAT
* *
20107 TGATAAAGCAATTATCCTGAATAGAATTCTGAAATTGACTAATAAAGAAATGATCCTGAATAGGA
1 TGATAAAGCAATGATCCTGAATAGAATTCTGAAATTGACTAATAAAGAAATGATCCTGAATAGAA
* * * * *
20172 TTC-AAACAAAAATTCATAAAGTAATGATCCTGAATAGGATTCTGAAATTGATAGATAAAGCAAT
66 TTCTAAA-AAAAATACATAAAGCAATGATCCTGAATAGGACTCTGAAATTGACAAATAAAGCAAT
20236 GATCCTGAATAGGA
130 GATCCTGAATAGGA
20250 CTCTGAGATT
Statistics
Matches: 123, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
143 2 0.02
144 121 0.98
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (144 bp):
TGATAAAGCAATGATCCTGAATAGAATTCTGAAATTGACTAATAAAGAAATGATCCTGAATAGAA
TTCTAAAAAAAATACATAAAGCAATGATCCTGAATAGGACTCTGAAATTGACAAATAAAGCAATG
ATCCTGAATAGGAT
Found at i:20240 original size:183 final size:183
Alignment explanation
Indices: 19925--20288 Score: 516
Period size: 183 Copynumber: 2.0 Consensus size: 183
19915 GAAATTGACA
* * * * *
19925 GATAAAGCCATGATCCTGAATAGGATTCGGAAATTCACTGATAATGCAATGATCCTGAATAGGAT
1 GATAAAGCAATGATCCTGAATAGAATTCGGAAATTCACTAATAAAGAAATGATCCTGAATAGGAT
* *** * *
19990 TCTGAACTTGTCTGATAAAGCAATGATCCTGAATAGAATTCTGAAATCGATAGATAAAGCGATGA
66 TCTAAACAAATCTCATAAAGCAATGATCCTGAATAGAATTCTGAAATCGATAGATAAAGCAATGA
*
20055 TCCTGAATAGGACTCTGAAATTGACAAATAAAGCAATGATCCTGAATAGGATT
131 TCCTGAATAGGACTCTGAAATTGACAAATAAAGCAATGATCCTGAACAGGATT
* * *
20108 GATAAAGCAATTATCCTGAATAGAATTCTGAAATTGACTAATAAAGAAATGATCCTGAATAGGAT
1 GATAAAGCAATGATCCTGAATAGAATTCGGAAATTCACTAATAAAGAAATGATCCTGAATAGGAT
* * *
20173 TC-AAACAAAAAT-TCATAAAGTAATGATCCTGAATAGGATTCTGAAATTGATAGATAAAGCAAT
66 TCTAAAC--AAATCTCATAAAGCAATGATCCTGAATAGAATTCTGAAATCGATAGATAAAGCAAT
* *
20236 GATCCTGAATAGGACTCTGAGATTGACAGATAAAGCAATGATCCTGAACAGGA
129 GATCCTGAATAGGACTCTGAAATTGACAAATAAAGCAATGATCCTGAACAGGA
20289 GTCTGAAATC
Statistics
Matches: 159, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
182 3 0.02
183 155 0.97
184 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (183 bp):
GATAAAGCAATGATCCTGAATAGAATTCGGAAATTCACTAATAAAGAAATGATCCTGAATAGGAT
TCTAAACAAATCTCATAAAGCAATGATCCTGAATAGAATTCTGAAATCGATAGATAAAGCAATGA
TCCTGAATAGGACTCTGAAATTGACAAATAAAGCAATGATCCTGAACAGGATT
Found at i:20303 original size:117 final size:117
Alignment explanation
Indices: 20108--20329 Score: 313
Period size: 117 Copynumber: 1.9 Consensus size: 117
20098 GAATAGGATT
* * * *
20108 GATAAAGCAATTATCCTGAATAGAATTCTGAAATTGACTAATAAAGAAATGATCCTGAATAGGAT
1 GATAAAGCAATGATCCTGAATAGAACTCTGAAATTGACTAATAAAGAAATGATCCTGAACAGGAG
*
20173 TCAAACAAAAATTCATAAAGTAATGATCCTGAATAGGATTCTGAAATTGATA
66 TCAAACAAAAATTCATAAAGAAATGATCCTGAATAGGATTCTGAAATTGATA
* * *
20225 GATAAAGCAATGATCCTGAATAGGACTCTGAGATTGAC-AGATAAAGCAATGATCCTGAACAGGA
1 GATAAAGCAATGATCCTGAATAGAACTCTGAAATTGACTA-ATAAAGAAATGATCCTGAACAGGA
* **
20289 GTCTGAA-ATCAATTCATAAAGAAATGATCCTGAATAGGATT
65 GTC-AAACAAAAATTCATAAAGAAATGATCCTGAATAGGATT
20330 AAAACACATA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
116 1 0.01
117 89 0.97
118 2 0.02
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26
Consensus pattern (117 bp):
GATAAAGCAATGATCCTGAATAGAACTCTGAAATTGACTAATAAAGAAATGATCCTGAACAGGAG
TCAAACAAAAATTCATAAAGAAATGATCCTGAATAGGATTCTGAAATTGATA
Found at i:20346 original size:78 final size:78
Alignment explanation
Indices: 20105--20351 Score: 266
Period size: 78 Copynumber: 3.2 Consensus size: 78
20095 CCTGAATAGG
* * *
20105 ATTGATAAAGCAATTATCCTGAATAGAATTCTGAAATTGACTAATAAAGAAATGATCCTGAATAG
1 ATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATTGATTAATAAAGAAATGATCCTGAATAG
*
20170 GATTCAAACAAAA
66 GATTAAAACAAAA
* * *
20183 ATTCATAAAGTAATGATCCTGAATAGGATTCTGAAATTGA-TAGATAAAGCAATGATCCTGAATA
1 ATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATTGATTA-ATAAAGAAATGATCCTGAATA
* * *** *
20247 GGACTCTGAGATTGAC
65 GGA-T-TAAAACAAAA
* * ** *
20263 A--GATAAAGCAATGATCCTGAACAGGAGTCTGAAATCAATTCATAAAGAAATGATCCTGAATAG
1 ATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATTGATTAATAAAGAAATGATCCTGAATAG
* *
20326 GATTAAAACACAT
66 GATTAAAACAAAA
20339 ATTGATAAAGCAA
1 ATTGATAAAGCAA
20352 AATAGTTCCT
Statistics
Matches: 138, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
76 5 0.04
77 3 0.02
78 123 0.89
79 2 0.01
80 5 0.04
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.26
Consensus pattern (78 bp):
ATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATTGATTAATAAAGAAATGATCCTGAATAG
GATTAAAACAAAA
Found at i:20346 original size:117 final size:117
Alignment explanation
Indices: 20104--20351 Score: 297
Period size: 117 Copynumber: 2.1 Consensus size: 117
20094 TCCTGAATAG
* * *
20104 GATTGATAAAGCAATTATCCTGAATAGAATTCTGAAATTGACTAATAAAGAAATGATCCTGAATA
1 GATTGATAAAGCAATGATCCTGAATAGAACTCTGAAATTGACTAATAAAGAAATGATCCTGAACA
* * ** *
20169 GGATTCAAACAAAAATTCATAAAGTAATGATCCTGAATAGGATTCTGAAATT
66 GGAGTCAAACAAAAATTCATAAAGAAATGATCCTGAATAGGATTCAAAAAAT
* * * *
20221 GATAGATAAAGCAATGATCCTGAATAGGACTCTGAGATTGAC-AGATAAAGCAATGATCCTGAAC
1 GATTGATAAAGCAATGATCCTGAATAGAACTCTGAAATTGACTA-ATAAAGAAATGATCCTGAAC
* **
20285 AGGAGTCTGAA-ATCAATTCATAAAGAAATGATCCTGAATAGGATT-AAAACACAT
65 AGGAGTC-AAACAAAAATTCATAAAGAAATGATCCTGAATAGGATTCAAAA-A-AT
20339 -ATTGATAAAGCAA
1 GATTGATAAAGCAA
20352 AATAGTTCCT
Statistics
Matches: 111, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
116 3 0.03
117 105 0.95
118 3 0.03
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.26
Consensus pattern (117 bp):
GATTGATAAAGCAATGATCCTGAATAGAACTCTGAAATTGACTAATAAAGAAATGATCCTGAACA
GGAGTCAAACAAAAATTCATAAAGAAATGATCCTGAATAGGATTCAAAAAAT
Found at i:20695 original size:147 final size:147
Alignment explanation
Indices: 20396--20976 Score: 558
Period size: 167 Copynumber: 3.7 Consensus size: 147
20386 GACTTGTCAA
* * * * *
20396 AATTAATACCCGGATGTTTTTGAAATCGTGACCAGAGGTCTTACAAATGTAAAGTCTGAATAGAG
1 AATTAATACCCGGAGGTTTCTGAAATTGTGCCCAGAGGTCTTACAAATGCAAA--C----TA-AG
* * *
20461 ACCTTGAGCAAGG-TTTTTTTTTTTGAAATTTAAATGCAACTTTGATTAACAACTTGATGCATTG
59 ACCTTGAGCAAGGTTTTTTTTTTTTGAAA-TTAAACGCAACTTTGATTAACAACTTGATGAAATG
* *
20525 AGGTGATACTCAGAGGATTTATCAG
123 AAGTGATACTCGGAGGATTTATCAG
* * *
20550 AATTAATACCCGGAGGTTTTTGAAATTGTGCCCGGAGGTCTTACAAATGCAAACT-CGACCTTGA
1 AATTAATACCCGGAGGTTTCTGAAATTGTGCCCAGAGGTCTTACAAATGCAAACTAAGACCTTGA
20614 GCAAGGTTTTTTTTTCTTTGAAATTCAAACGCAAC-TTGATTAACAACTTGATGAAATGAAGTGA
66 GCAAGGTTTTTTTTT-TTTGAAATT-AAACGCAACTTTGATTAACAACTTGATGAAATGAAGTGA
20678 TACTCGGAGGATTTATCAG
129 TACTCGGAGGATTTATCAG
* *** *
20697 AATTAATACTCGGAGGTTTCTGAAATTGTGCTTGGAGGTCTTACAAATGCTAACTTTGAATAAAG
1 AATTAATACCCGGAGGTTTCTGAAATTGTGCCCAGAGGTCTTACAAATGC-AA-----ACT-AAG
*
20762 ACCTTGAGCAAGGTTTTTTTTTTTTTTTTTTTTTTTTGAAACTTAAACACAACTTTGATTAACAA
59 ACCTTGAGCAAGG------------TTTTTTTTTTTTGAAA-TTAAACGCAACTTTGATTAACAA
*
20827 CTTGATGAAGTGAAGTGATAC-CTGGAGGATTTATCAG
111 CTTGATGAAATGAAGTGATACTC-GGAGGATTTATCAG
* *
20864 AGTTAATACCCGGAGGTTTCTGAAATTGTGCCCAGAGGTCTTACAAATGCTAACTTTGAATAAAG
1 AATTAATACCCGGAGGTTTCTGAAATTGTGCCCAGAGGTCTTACAAATGC-AA-----ACT-AAG
20929 ACCTTGAGCAAGGGTTCTTTTTTTTTTTGAAACTTAAACGCAACTTTG
59 ACCTTGAGCAA-GG-T-TTTTTTTTTTTGAAA-TTAAACGCAACTTTG
20977 CTGAAAAACT
Statistics
Matches: 374, Mismatches: 25, Indels: 52
0.83 0.06 0.12
Matches are distributed among these distances:
146 14 0.04
147 100 0.27
148 18 0.05
152 1 0.00
153 2 0.01
154 48 0.13
155 14 0.04
157 2 0.01
158 30 0.08
166 16 0.04
167 127 0.34
168 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (147 bp):
AATTAATACCCGGAGGTTTCTGAAATTGTGCCCAGAGGTCTTACAAATGCAAACTAAGACCTTGA
GCAAGGTTTTTTTTTTTTGAAATTAAACGCAACTTTGATTAACAACTTGATGAAATGAAGTGATA
CTCGGAGGATTTATCAG
Found at i:21996 original size:31 final size:34
Alignment explanation
Indices: 21961--22027 Score: 95
Period size: 31 Copynumber: 2.1 Consensus size: 34
21951 CCTTTTCAAA
21961 TTTCTCTGTTTT-TTTATTTCATT-TCCA-TTCT
1 TTTCTCTGTTTTCTTTATTTCATTCTCCACTTCT
* *
21992 TTTCTCTTTTTTCTTTTTTTCATTCTCCACTTCT
1 TTTCTCTGTTTTCTTTATTTCATTCTCCACTTCT
22026 TT
1 TT
22028 GTTTACTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 11 0.35
32 10 0.32
33 4 0.13
34 6 0.19
ACGTcount: A:0.07, C:0.22, G:0.01, T:0.69
Consensus pattern (34 bp):
TTTCTCTGTTTTCTTTATTTCATTCTCCACTTCT
Found at i:31505 original size:19 final size:18
Alignment explanation
Indices: 31472--31507 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
31462 TTGAGATAAT
31472 TCTTCAATGATCTTCAAA
1 TCTTCAATGATCTTCAAA
*
31490 TCTTCAAATTATCTTCAA
1 TCTTC-AATGATCTTCAA
31508 TAAGTCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42
Consensus pattern (18 bp):
TCTTCAATGATCTTCAAA
Done.