Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012987.1 Corchorus olitorius cultivar O-4 contig13020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53611

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4984--5137
77
2.0
77
96
0
281
36
25
14
23
1.93
10818--10943
63
2.0
63
98
0
243
25
27
17
29
1.97
11970--11999
7
4.3
7
91
0
51
53
26
3
16
1.59
20363--20412
25
2.0
25
100
0
100
48
4
12
36
1.59
22948--22983
19
1.9
18
88
5
54
41
2
22
33
1.68
24528--24610
42
2.0
42
97
0
157
39
20
6
33
1.77
25780--25808
13
2.3
13
94
5
51
0
13
0
86
0.58
28810--28845
18
2.0
18
88
0
54
47
5
11
36
1.63
29699--29734
19
1.9
18
88
5
54
41
2
22
33
1.68
31621--31654
9
3.9
9
84
7
52
26
11
17
44
1.83
31622--31656
17
2.1
17
100
0
70
28
11
20
40
1.87
53222--53412
29
6.6
28
75
8
161
20
16
24
38
1.92

Tables:   1

The End!