genome.fa.s12996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012996.1 Corchorus olitorius cultivar O-4 contig13029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34321

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6496--6520	11	2.3	11	100	0	50	8	16	8	68	1.38
12997--13097	21	4.8	21	91	0	148	36	22	15	24	1.94
13066--13203	71	1.9	71	92	0	231	36	24	13	25	1.92
13137--13473	101	3.3	101	91	0	557	33	23	11	31	1.91
13331--13373	21	2.0	21	86	0	59	37	25	11	25	1.90
13432--13558	21	6.0	21	81	3	139	35	25	12	26	1.92
13432--13558	42	3.0	42	80	0	155	35	25	12	26	1.92
13433--13557	63	2.0	63	85	3	171	36	24	12	27	1.92
13617--13864	21	12.0	21	78	12	226	36	21	13	28	1.91
13617--13864	62	4.0	62	78	11	292	36	21	13	28	1.91
13634--13860	124	1.8	124	99	0	445	37	21	13	28	1.91
13851--13887	17	2.2	17	90	4	58	37	13	13	35	1.84
13912--13959	21	2.3	21	96	0	87	41	35	10	12	1.77
14018--14143	21	6.0	21	83	5	148	37	21	13	27	1.91
14021--14144	62	2.0	62	90	3	196	38	19	13	28	1.90
14018--14131	41	2.7	42	87	6	160	36	21	12	28	1.90
14398--14428	15	2.1	15	100	0	62	48	6	0	45	1.28
14486--14532	20	2.4	19	76	20	51	46	8	2	42	1.46
27633--27711	40	2.0	40	92	5	133	26	22	26	24	2.00
27716--27763	21	2.3	21	92	7	80	27	20	25	27	1.99
28718--29646	154	6.0	154	92	0	1547	20	19	19	40	1.91
31133--33445	154	15.1	154	89	2	3404	21	19	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31133--33445	613	3.8	612	89	2	3414	21	19	18	40	1.91
33453--33531	40	2.0	40	95	5	142	25	22	26	25	2.00
33536--33580	21	2.1	21	84	8	56	31	20	24	24	1.98

Tables:   1

The End!