Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012999.1 Corchorus olitorius cultivar O-4 contig13032, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74186

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
326--367
15
2.8
16
82
10
52
38
9
14
38
1.78
4234--4312
31
2.7
29
71
13
72
32
18
11
36
1.87
12428--12464
13
2.8
13
91
0
65
27
13
13
45
1.81
15910--15939
15
2.0
15
93
0
51
43
13
10
33
1.77
16384--16418
6
5.7
6
96
3
61
37
14
0
48
1.44
16468--16521
27
1.9
28
88
7
83
64
0
1
33
1.04
17292--17341
25
2.0
26
96
4
93
54
4
4
38
1.38
20726--20795
36
1.9
36
97
0
131
61
7
8
22
1.49
21251--21594
179
1.9
178
92
1
582
40
7
13
38
1.74
23310--23356
3
15.7
3
100
0
94
0
31
0
68
0.90
23786--23888
51
2.0
51
100
0
206
19
34
10
34
1.86
29857--29921
24
2.6
25
80
4
87
55
1
7
35
1.38
52386--52418
12
2.6
13
90
4
50
39
0
36
24
1.56
59002--59053
21
2.7
20
85
11
72
19
9
17
53
1.70
61993--62018
11
2.4
11
100
0
52
26
0
26
46
1.53

Tables:   1

The End!