Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000013.1 Corchorus olitorius cultivar O-4 contig00013, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4380
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:1196 original size:62 final size:62

Alignment explanation


    Indices: 1099--1221  Score: 219
    Period size: 62  Copynumber: 2.0  Consensus size: 62

       1089 CATTTTGCAA

                         *                                         *      
       1099 CCTAAAATTTATAGGGACTCAATTTCGCATCGTCATGGAGTCCTACATGGCATGCTACGTGG
          1 CCTAAAATTTATACGGACTCAATTTCGCATCGTCATGGAGTCCTACATGGCATGCCACGTGG

                                                      *                  
       1161 CCTAAAATTTATACGGACTCAATTTCGCATCGTCATGGAGTCTTACATGGCATGCCACGTG
          1 CCTAAAATTTATACGGACTCAATTTCGCATCGTCATGGAGTCCTACATGGCATGCCACGTG

       1222 TACAAAAATT


Statistics
Matches: 58,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  62   58  1.00

ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29


Consensus pattern (62 bp):   
CCTAAAATTTATACGGACTCAATTTCGCATCGTCATGGAGTCCTACATGGCATGCCACGTGG

Done.