Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013001.1 Corchorus olitorius cultivar O-4 contig13034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27966

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6750--6793
22
2.0
22
86
0
61
25
25
22
27
2.00
8628--8674
2
23.5
2
91
0
76
53
46
0
0
1.00
9009--9061
20
2.7
20
96
0
97
45
26
9
18
1.80
9188--9237
26
1.9
26
95
0
91
46
42
0
12
1.41
13979--14067
29
3.0
30
72
9
83
28
26
25
19
1.99
14003--14067
29
2.2
30
81
10
89
27
29
26
16
1.97
17666--17730
31
2.1
32
88
8
98
16
13
24
44
1.85
20090--20130
20
2.0
20
100
0
82
29
17
19
34
1.94
21174--21211
20
2.0
20
89
5
60
5
18
0
76
0.97
22979--23336
72
5.1
71
71
16
198
26
17
3
52
1.60
22972--23685
34
21.0
34
79
9
685
27
18
2
51
1.59
22986--23682
140
5.1
136
85
6
737
27
18
2
51
1.59
22986--23683
67
10.3
67
79
11
632
27
18
2
51
1.59
23885--23978
45
2.2
43
87
11
131
39
21
4
35
1.73
24955--25552
67
8.9
68
88
3
743
28
18
1
51
1.55
24954--25551
168
3.6
167
91
1
957
28
18
1
51
1.55
24955--25553
101
5.9
100
87
4
717
28
18
1
51
1.55
25757--25847
45
2.1
44
86
12
125
39
20
4
35
1.73

Tables:   1

The End!