Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013003.1 Corchorus olitorius cultivar O-4 contig13036, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49367

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1041--1080
14
2.8
14
84
3
53
50
2
0
47
1.14
4196--4228
15
2.2
15
100
0
66
36
6
15
42
1.71
4322--4363
21
2.0
21
90
9
68
21
9
19
50
1.75
4461--4509
23
2.1
23
85
7
64
16
26
6
51
1.68
4685--4754
33
2.2
33
92
2
115
20
30
2
47
1.64
6227--6305
38
2.1
38
92
4
133
26
13
27
31
1.94
9871--9912
21
2.0
21
90
9
68
21
9
19
50
1.75
10010--10058
23
2.1
23
88
7
73
16
24
6
53
1.66
15351--15429
8
10.6
8
70
19
64
35
11
1
51
1.46
15448--15509
31
2.0
31
96
0
115
30
22
4
41
1.74
17218--17279
31
2.0
31
96
0
115
30
22
6
40
1.79
17315--17499
93
2.0
93
92
0
307
34
12
2
50
1.53
18783--18876
45
2.2
43
84
7
129
38
22
5
34
1.77
20151--20263
57
2.0
56
94
1
199
54
0
12
32
1.38
23169--23213
14
3.5
12
84
9
54
31
0
11
57
1.33
31699--31948
128
1.9
131
89
5
391
17
24
22
35
1.95
32898--32975
29
2.7
29
85
2
102
41
12
25
20
1.88
44023--44064
18
2.5
17
84
7
50
19
14
0
66
1.25
45634--45895
107
2.5
104
89
2
382
40
8
8
41
1.67
49333--49367
12
3.0
12
87
8
54
0
25
0
74
0.82
49324--49361
18
2.2
17
86
9
51
2
21
0
76
0.91

Tables:   1

The End!