Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013007.1 Corchorus olitorius cultivar O-4 contig13040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47569

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
264--519
123
2.0
128
90
6
405
37
10
1
50
1.47
505--543
14
2.9
13
80
3
51
41
2
2
53
1.28
8096--8215
60
2.0
60
96
0
222
35
19
14
30
1.91
8543--8580
20
1.9
20
94
0
67
15
18
0
65
1.27
8662--8694
17
1.9
18
88
11
52
54
6
6
33
1.50
36892--36922
6
5.3
6
92
7
55
48
0
16
35
1.46
38921--38945
8
3.1
8
100
0
50
24
76
0
0
0.80
40085--40161
40
1.9
40
89
5
120
36
18
3
41
1.69
43189--43254
33
2.0
33
88
5
98
27
30
18
24
1.98
44976--45414
75
5.9
74
88
2
630
24
24
18
32
1.97
45409--45833
109
3.8
109
80
7
455
35
23
19
21
1.96
45406--45836
36
11.6
37
73
8
306
35
22
19
21
1.96
45410--45833
73
5.8
69
73
9
247
35
23
19
21
1.96
45562--45814
37
7.0
33
70
16
112
35
22
19
21
1.96
46124--46421
44
6.8
44
88
3
438
28
22
17
31
1.96
47068--47176
56
2.0
54
82
8
134
30
31
14
23
1.95

Tables:   1

The End!