Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013009.1 Corchorus olitorius cultivar O-4 contig13042, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6269
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30


Found at i:3003 original size:21 final size:21

Alignment explanation


    Indices: 2944--2994  Score: 93
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       2934 ATAAACCCTA

                                 
       2944 GTACCACTTAGATCCAATTTT
          1 GTACCACTTAGATCCAATTTT

                                 
       2965 GTACCACTTAGATCCAATTTT
          1 GTACCACTTAGATCCAATTTT

               *     
       2986 GTATCACTT
          1 GTACCACTT

       2995 GTCTCCAATA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39


Consensus pattern (21 bp):   
GTACCACTTAGATCCAATTTT

Found at i:3992 original size:11 final size:11

Alignment explanation


    Indices: 3978--4011  Score: 68
    Period size: 11  Copynumber: 3.1  Consensus size: 11

       3968 TAAAGGAAAA

                       
       3978 AGCTAGGAAGG
          1 AGCTAGGAAGG

                       
       3989 AGCTAGGAAGG
          1 AGCTAGGAAGG

                       
       4000 AGCTAGGAAGG
          1 AGCTAGGAAGG

             
       4011 A
          1 A

       4012 TCCTACTCCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   23  1.00

ACGTcount: A:0.38, C:0.09, G:0.44, T:0.09


Consensus pattern (11 bp):   
AGCTAGGAAGG
Done.