Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013015.1 Corchorus olitorius cultivar O-4 contig13048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59982

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
476--524
21
2.3
21
82
6
55
40
16
28
14
1.87
10125--10442
173
1.8
173
99
0
627
29
11
21
37
1.88
12522--12563
19
2.2
19
86
0
57
14
23
26
35
1.93
12538--12627
28
3.2
28
90
3
135
15
21
24
38
1.92
13151--13226
25
3.1
25
94
1
136
19
25
3
51
1.64
13925--13959
17
2.1
17
100
0
70
42
17
11
28
1.83
15336--15470
27
4.8
28
79
8
121
16
20
8
54
1.67
23396--23424
3
9.7
3
100
0
58
68
0
0
31
0.89
25988--26037
23
2.2
23
85
0
64
38
4
0
58
1.17
25983--26037
21
2.5
22
83
13
62
36
3
0
60
1.15
26645--26676
16
1.9
17
93
6
57
53
6
0
40
1.26
31643--31690
2
24.0
2
86
0
69
52
4
0
43
1.20
31859--31886
2
14.0
2
100
0
56
50
0
0
50
1.00
38871--38970
27
3.7
27
79
2
112
18
16
27
39
1.91
41753--41841
41
2.2
41
89
0
133
21
16
16
44
1.86
44100--44142
22
2.0
21
81
4
50
65
9
9
16
1.47
50042--50089
23
2.1
23
96
0
87
31
27
14
27
1.95
59144--59178
12
2.9
12
100
0
70
14
51
25
8
1.70

Tables:   1

The End!