Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013016.1 Corchorus olitorius cultivar O-4 contig13049, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70987

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3336--3477
76
1.9
76
81
7
173
24
29
28
17
1.97
13608--13649
16
2.6
16
88
7
59
40
0
42
16
1.48
17550--17748
100
2.0
100
95
0
362
25
22
29
23
1.99
25461--25500
12
3.0
14
82
14
57
27
5
35
32
1.79
28160--28205
19
2.5
19
82
10
60
32
0
2
65
1.05
38016--38241
22
10.5
21
77
11
185
34
15
10
39
1.82
37838--38241
44
9.3
44
71
9
240
34
16
11
37
1.84
38368--38622
22
11.9
21
70
13
114
33
14
10
41
1.80
38399--39043
44
14.3
44
67
15
131
35
16
9
38
1.81
38370--38524
66
2.3
66
82
0
193
34
14
10
39
1.82
38628--38738
22
5.2
21
69
17
52
39
16
7
36
1.76
38748--38790
22
2.0
22
86
9
61
30
18
9
41
1.82
38804--39092
22
13.0
22
76
11
243
37
17
9
34
1.83
38791--39092
66
4.5
66
87
4
369
37
17
9
35
1.82
42674--42729
22
2.7
21
86
8
80
16
37
10
35
1.83
46757--46793
2
18.5
2
100
0
74
51
0
0
48
1.00
50925--51019
46
2.1
46
100
0
190
21
9
18
50
1.75
52599--52786
60
3.0
64
91
7
321
30
22
19
27
1.98
62465--62498
6
5.7
6
100
0
68
14
50
17
17
1.79
63489--63593
36
2.9
36
91
2
167
21
26
8
42
1.82
69075--69189
61
1.9
60
92
1
194
33
15
17
33
1.91

Tables:   1

The End!