Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013017.1 Corchorus olitorius cultivar O-4 contig13050, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4070
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26


Found at i:2960 original size:13 final size:13

Alignment explanation


    Indices: 2942--2967  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2932 CAACTGATAC

                         
       2942 CTGACATTACCAA
          1 CTGACATTACCAA

                         
       2955 CTGACATTACCAA
          1 CTGACATTACCAA

       2968 AAGTATACTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23


Consensus pattern (13 bp):   
CTGACATTACCAA
Done.