Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001302.1 Corchorus olitorius cultivar O-4 contig01302, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1821
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29


Found at i:512 original size:27 final size:28

Alignment explanation


    Indices: 446--520  Score: 116
    Period size: 28  Copynumber: 2.7  Consensus size: 28

        436 AAGGTTCATG

                                        
        446 AAATGACTAAAATGCCCCTGGGTGTACA
          1 AAATGACTAAAATGCCCCTGGGTGTACA

                   *                 *  
        474 AAATGACCAAAATGCCCCTGGGTGTGC-
          1 AAATGACTAAAATGCCCCTGGGTGTACA

                         *      
        501 AAATGACTAAAATACCCCTG
          1 AAATGACTAAAATGCCCCTG

        521 AACATGGAAA


Statistics
Matches: 43,  Mismatches: 4, Indels: 1
        0.90            0.08        0.02

Matches are distributed among these distances:
  27   18  0.42
  28   25  0.58

ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20


Consensus pattern (28 bp):   
AAATGACTAAAATGCCCCTGGGTGTACA
Done.