Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013026.1 Corchorus olitorius cultivar O-4 contig13059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4366
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33


Found at i:54 original size:23 final size:23

Alignment explanation


    Indices: 24--87  Score: 110
    Period size: 23  Copynumber: 2.8  Consensus size: 23

         14 GCCGGCTGTG

                                   
         24 GCTTGGACATGCCCGGGCCTTTA
          1 GCTTGGACATGCCCGGGCCTTTA

                                   
         47 GCTTGGACATGCCCGGGCCTTTA
          1 GCTTGGACATGCCCGGGCCTTTA

               *       *      
         70 GCTCGGACATGTCCGGGC
          1 GCTTGGACATGCCCGGGC

         88 TAGGGCCTGG


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  23   39  1.00

ACGTcount: A:0.12, C:0.31, G:0.33, T:0.23


Consensus pattern (23 bp):   
GCTTGGACATGCCCGGGCCTTTA
Done.